fmm_pts.txx 205 KB

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  1. /**
  2. * \file fmm_pts.txx
  3. * \author Dhairya Malhotra, dhairya.malhotra@gmail.com
  4. * \date 3-07-2011
  5. * \brief This file contains the implementation of the FMM_Pts class.
  6. */
  7. #include <omp.h>
  8. #include <cmath>
  9. #include <cstdlib>
  10. #include <cassert>
  11. #include <sstream>
  12. #include <iostream>
  13. #include <stdint.h>
  14. #include <set>
  15. #ifdef PVFMM_HAVE_SYS_STAT_H
  16. #include <sys/stat.h>
  17. #endif
  18. #ifdef __SSE__
  19. #include <xmmintrin.h>
  20. #endif
  21. #ifdef __SSE2__
  22. #include <emmintrin.h>
  23. #endif
  24. #ifdef __SSE3__
  25. #include <pmmintrin.h>
  26. #endif
  27. #ifdef __AVX__
  28. #include <immintrin.h>
  29. #endif
  30. #if defined(__MIC__)
  31. #include <immintrin.h>
  32. #endif
  33. #include <profile.hpp>
  34. namespace pvfmm{
  35. /**
  36. * \brief Returns the coordinates of points on the surface of a cube.
  37. * \param[in] p Number of points on an edge of the cube is (n+1)
  38. * \param[in] c Coordinates to the centre of the cube (3D array).
  39. * \param[in] alpha Scaling factor for the size of the cube.
  40. * \param[in] depth Depth of the cube in the octree.
  41. * \return Vector with coordinates of points on the surface of the cube in the
  42. * format [x0 y0 z0 x1 y1 z1 .... ].
  43. */
  44. template <class Real_t>
  45. std::vector<Real_t> surface(int p, Real_t* c, Real_t alpha, int depth){
  46. size_t n_=(6*(p-1)*(p-1)+2); //Total number of points.
  47. std::vector<Real_t> coord(n_*3);
  48. coord[0]=coord[1]=coord[2]=-1.0;
  49. size_t cnt=1;
  50. for(int i=0;i<p-1;i++)
  51. for(int j=0;j<p-1;j++){
  52. coord[cnt*3 ]=-1.0;
  53. coord[cnt*3+1]=(2.0*(i+1)-p+1)/(p-1);
  54. coord[cnt*3+2]=(2.0*j-p+1)/(p-1);
  55. cnt++;
  56. }
  57. for(int i=0;i<p-1;i++)
  58. for(int j=0;j<p-1;j++){
  59. coord[cnt*3 ]=(2.0*i-p+1)/(p-1);
  60. coord[cnt*3+1]=-1.0;
  61. coord[cnt*3+2]=(2.0*(j+1)-p+1)/(p-1);
  62. cnt++;
  63. }
  64. for(int i=0;i<p-1;i++)
  65. for(int j=0;j<p-1;j++){
  66. coord[cnt*3 ]=(2.0*(i+1)-p+1)/(p-1);
  67. coord[cnt*3+1]=(2.0*j-p+1)/(p-1);
  68. coord[cnt*3+2]=-1.0;
  69. cnt++;
  70. }
  71. for(size_t i=0;i<(n_/2)*3;i++)
  72. coord[cnt*3+i]=-coord[i];
  73. Real_t r = 0.5*pow(0.5,depth);
  74. Real_t b = alpha*r;
  75. for(size_t i=0;i<n_;i++){
  76. coord[i*3+0]=(coord[i*3+0]+1.0)*b+c[0];
  77. coord[i*3+1]=(coord[i*3+1]+1.0)*b+c[1];
  78. coord[i*3+2]=(coord[i*3+2]+1.0)*b+c[2];
  79. }
  80. return coord;
  81. }
  82. /**
  83. * \brief Returns the coordinates of points on the upward check surface of cube.
  84. * \see surface()
  85. */
  86. template <class Real_t>
  87. std::vector<Real_t> u_check_surf(int p, Real_t* c, int depth){
  88. Real_t r=0.5*pow(0.5,depth);
  89. Real_t coord[3]={(Real_t)(c[0]-r*(RAD1-1.0)),(Real_t)(c[1]-r*(RAD1-1.0)),(Real_t)(c[2]-r*(RAD1-1.0))};
  90. return surface(p,coord,(Real_t)RAD1,depth);
  91. }
  92. /**
  93. * \brief Returns the coordinates of points on the upward equivalent surface of cube.
  94. * \see surface()
  95. */
  96. template <class Real_t>
  97. std::vector<Real_t> u_equiv_surf(int p, Real_t* c, int depth){
  98. Real_t r=0.5*pow(0.5,depth);
  99. Real_t coord[3]={(Real_t)(c[0]-r*(RAD0-1.0)),(Real_t)(c[1]-r*(RAD0-1.0)),(Real_t)(c[2]-r*(RAD0-1.0))};
  100. return surface(p,coord,(Real_t)RAD0,depth);
  101. }
  102. /**
  103. * \brief Returns the coordinates of points on the downward check surface of cube.
  104. * \see surface()
  105. */
  106. template <class Real_t>
  107. std::vector<Real_t> d_check_surf(int p, Real_t* c, int depth){
  108. Real_t r=0.5*pow(0.5,depth);
  109. Real_t coord[3]={(Real_t)(c[0]-r*(RAD0-1.0)),(Real_t)(c[1]-r*(RAD0-1.0)),(Real_t)(c[2]-r*(RAD0-1.0))};
  110. return surface(p,coord,(Real_t)RAD0,depth);
  111. }
  112. /**
  113. * \brief Returns the coordinates of points on the downward equivalent surface of cube.
  114. * \see surface()
  115. */
  116. template <class Real_t>
  117. std::vector<Real_t> d_equiv_surf(int p, Real_t* c, int depth){
  118. Real_t r=0.5*pow(0.5,depth);
  119. Real_t coord[3]={(Real_t)(c[0]-r*(RAD1-1.0)),(Real_t)(c[1]-r*(RAD1-1.0)),(Real_t)(c[2]-r*(RAD1-1.0))};
  120. return surface(p,coord,(Real_t)RAD1,depth);
  121. }
  122. /**
  123. * \brief Defines the 3D grid for convolution in FFT acceleration of V-list.
  124. * \see surface()
  125. */
  126. template <class Real_t>
  127. std::vector<Real_t> conv_grid(int p, Real_t* c, int depth){
  128. Real_t r=pow(0.5,depth);
  129. Real_t a=r*RAD0;
  130. Real_t coord[3]={c[0],c[1],c[2]};
  131. int n1=p*2;
  132. int n2=(int)pow((Real_t)n1,2);
  133. int n3=(int)pow((Real_t)n1,3);
  134. std::vector<Real_t> grid(n3*3);
  135. for(int i=0;i<n1;i++)
  136. for(int j=0;j<n1;j++)
  137. for(int k=0;k<n1;k++){
  138. grid[(i+n1*j+n2*k)*3+0]=(i-p)*a/(p-1)+coord[0];
  139. grid[(i+n1*j+n2*k)*3+1]=(j-p)*a/(p-1)+coord[1];
  140. grid[(i+n1*j+n2*k)*3+2]=(k-p)*a/(p-1)+coord[2];
  141. }
  142. return grid;
  143. }
  144. template <class Real_t>
  145. void FMM_Data<Real_t>::Clear(){
  146. upward_equiv.Resize(0);
  147. }
  148. template <class Real_t>
  149. PackedData FMM_Data<Real_t>::PackMultipole(void* buff_ptr){
  150. PackedData p0; p0.data=buff_ptr;
  151. p0.length=upward_equiv.Dim()*sizeof(Real_t);
  152. if(p0.length==0) return p0;
  153. if(p0.data==NULL) p0.data=(char*)&upward_equiv[0];
  154. else mem::memcopy(p0.data,&upward_equiv[0],p0.length);
  155. return p0;
  156. }
  157. template <class Real_t>
  158. void FMM_Data<Real_t>::AddMultipole(PackedData p0){
  159. Real_t* data=(Real_t*)p0.data;
  160. size_t n=p0.length/sizeof(Real_t);
  161. assert(upward_equiv.Dim()==n);
  162. Matrix<Real_t> v0(1,n,&upward_equiv[0],false);
  163. Matrix<Real_t> v1(1,n,data,false);
  164. v0+=v1;
  165. }
  166. template <class Real_t>
  167. void FMM_Data<Real_t>::InitMultipole(PackedData p0, bool own_data){
  168. Real_t* data=(Real_t*)p0.data;
  169. size_t n=p0.length/sizeof(Real_t);
  170. if(n==0) return;
  171. if(own_data){
  172. upward_equiv=Vector<Real_t>(n, &data[0], false);
  173. }else{
  174. upward_equiv.ReInit(n, &data[0], false);
  175. }
  176. }
  177. template <class FMMNode>
  178. FMM_Pts<FMMNode>::~FMM_Pts() {
  179. if(mat!=NULL){
  180. // int rank;
  181. // MPI_Comm_rank(comm,&rank);
  182. // if(rank==0) mat->Save2File("Precomp.data");
  183. delete mat;
  184. mat=NULL;
  185. }
  186. if(vprecomp_fft_flag) FFTW_t<Real_t>::fft_destroy_plan(vprecomp_fftplan);
  187. #ifdef __INTEL_OFFLOAD0
  188. #pragma offload target(mic:0)
  189. #endif
  190. {
  191. if(vlist_fft_flag ) FFTW_t<Real_t>::fft_destroy_plan(vlist_fftplan );
  192. if(vlist_ifft_flag) FFTW_t<Real_t>::fft_destroy_plan(vlist_ifftplan);
  193. vlist_fft_flag =false;
  194. vlist_ifft_flag=false;
  195. }
  196. }
  197. template <class FMMNode>
  198. void FMM_Pts<FMMNode>::Initialize(int mult_order, const MPI_Comm& comm_, const Kernel<Real_t>* kernel_){
  199. Profile::Tic("InitFMM_Pts",&comm_,true);{
  200. int rank;
  201. MPI_Comm_rank(comm_,&rank);
  202. bool verbose=false;
  203. #ifndef NDEBUG
  204. #ifdef __VERBOSE__
  205. if(!rank) verbose=true;
  206. #endif
  207. #endif
  208. if(kernel_) kernel_->Initialize(verbose);
  209. multipole_order=mult_order;
  210. comm=comm_;
  211. kernel=kernel_;
  212. assert(kernel!=NULL);
  213. bool save_precomp=false;
  214. mat=new PrecompMat<Real_t>(ScaleInvar());
  215. if(this->mat_fname.size()==0){// && !this->ScaleInvar()){
  216. std::stringstream st;
  217. st<<PVFMM_PRECOMP_DATA_PATH;
  218. if(!st.str().size()){ // look in PVFMM_DIR
  219. char* pvfmm_dir = getenv ("PVFMM_DIR");
  220. if(pvfmm_dir) st<<pvfmm_dir;
  221. }
  222. #ifndef STAT_MACROS_BROKEN
  223. if(st.str().size()){ // check if the path is a directory
  224. struct stat stat_buff;
  225. if(stat(st.str().c_str(), &stat_buff) || !S_ISDIR(stat_buff.st_mode)){
  226. std::cout<<"error: path not found: "<<st.str()<<'\n';
  227. exit(0);
  228. }
  229. }
  230. #endif
  231. if(st.str().size()) st<<'/';
  232. st<<"Precomp_"<<kernel->ker_name.c_str()<<"_m"<<mult_order;
  233. if(sizeof(Real_t)==8) st<<"";
  234. else if(sizeof(Real_t)==4) st<<"_f";
  235. else st<<"_t"<<sizeof(Real_t);
  236. st<<".data";
  237. this->mat_fname=st.str();
  238. save_precomp=true;
  239. }
  240. this->mat->LoadFile(mat_fname.c_str(), this->comm);
  241. interac_list.Initialize(COORD_DIM, this->mat);
  242. Profile::Tic("PrecompUC2UE",&comm,false,4);
  243. this->PrecompAll(UC2UE0_Type);
  244. this->PrecompAll(UC2UE1_Type);
  245. Profile::Toc();
  246. Profile::Tic("PrecompDC2DE",&comm,false,4);
  247. this->PrecompAll(DC2DE0_Type);
  248. this->PrecompAll(DC2DE1_Type);
  249. Profile::Toc();
  250. Profile::Tic("PrecompBC",&comm,false,4);
  251. { /*
  252. int type=BC_Type;
  253. for(int l=0;l<MAX_DEPTH;l++)
  254. for(size_t indx=0;indx<this->interac_list.ListCount((Mat_Type)type);indx++){
  255. Matrix<Real_t>& M=this->mat->Mat(l, (Mat_Type)type, indx);
  256. M.Resize(0,0);
  257. } // */
  258. }
  259. this->PrecompAll(BC_Type,0);
  260. Profile::Toc();
  261. Profile::Tic("PrecompU2U",&comm,false,4);
  262. this->PrecompAll(U2U_Type);
  263. Profile::Toc();
  264. Profile::Tic("PrecompD2D",&comm,false,4);
  265. this->PrecompAll(D2D_Type);
  266. Profile::Toc();
  267. if(save_precomp){
  268. Profile::Tic("Save2File",&this->comm,false,4);
  269. if(!rank){
  270. FILE* f=fopen(this->mat_fname.c_str(),"r");
  271. if(f==NULL) { //File does not exists.
  272. this->mat->Save2File(this->mat_fname.c_str());
  273. }else fclose(f);
  274. }
  275. Profile::Toc();
  276. }
  277. Profile::Tic("PrecompV",&comm,false,4);
  278. this->PrecompAll(V_Type);
  279. Profile::Toc();
  280. Profile::Tic("PrecompV1",&comm,false,4);
  281. this->PrecompAll(V1_Type);
  282. Profile::Toc();
  283. }Profile::Toc();
  284. }
  285. template <class Real_t>
  286. Permutation<Real_t> equiv_surf_perm(size_t m, size_t p_indx, const Permutation<Real_t>& ker_perm, const Vector<Real_t>* scal_exp=NULL){
  287. Real_t eps=1e-10;
  288. int dof=ker_perm.Dim();
  289. Real_t c[3]={-0.5,-0.5,-0.5};
  290. std::vector<Real_t> trg_coord=d_check_surf(m,c,0);
  291. int n_trg=trg_coord.size()/3;
  292. Permutation<Real_t> P=Permutation<Real_t>(n_trg*dof);
  293. if(p_indx==ReflecX || p_indx==ReflecY || p_indx==ReflecZ){ // Set P.perm
  294. for(int i=0;i<n_trg;i++)
  295. for(int j=0;j<n_trg;j++){
  296. if(fabs(trg_coord[i*3+0]-trg_coord[j*3+0]*(p_indx==ReflecX?-1.0:1.0))<eps)
  297. if(fabs(trg_coord[i*3+1]-trg_coord[j*3+1]*(p_indx==ReflecY?-1.0:1.0))<eps)
  298. if(fabs(trg_coord[i*3+2]-trg_coord[j*3+2]*(p_indx==ReflecZ?-1.0:1.0))<eps){
  299. for(int k=0;k<dof;k++){
  300. P.perm[j*dof+k]=i*dof+ker_perm.perm[k];
  301. }
  302. }
  303. }
  304. }else if(p_indx==SwapXY || p_indx==SwapXZ){
  305. for(int i=0;i<n_trg;i++)
  306. for(int j=0;j<n_trg;j++){
  307. if(fabs(trg_coord[i*3+0]-trg_coord[j*3+(p_indx==SwapXY?1:2)])<eps)
  308. if(fabs(trg_coord[i*3+1]-trg_coord[j*3+(p_indx==SwapXY?0:1)])<eps)
  309. if(fabs(trg_coord[i*3+2]-trg_coord[j*3+(p_indx==SwapXY?2:0)])<eps){
  310. for(int k=0;k<dof;k++){
  311. P.perm[j*dof+k]=i*dof+ker_perm.perm[k];
  312. }
  313. }
  314. }
  315. }else{
  316. for(int j=0;j<n_trg;j++){
  317. for(int k=0;k<dof;k++){
  318. P.perm[j*dof+k]=j*dof+ker_perm.perm[k];
  319. }
  320. }
  321. }
  322. if(scal_exp && p_indx==Scaling){ // Set level-by-level scaling
  323. assert(dof==scal_exp->Dim());
  324. Vector<Real_t> scal(scal_exp->Dim());
  325. for(size_t i=0;i<scal.Dim();i++){
  326. scal[i]=pow(2.0,(*scal_exp)[i]);
  327. }
  328. for(int j=0;j<n_trg;j++){
  329. for(int i=0;i<dof;i++){
  330. P.scal[j*dof+i]*=scal[i];
  331. }
  332. }
  333. }
  334. { // Set P.scal
  335. for(int j=0;j<n_trg;j++){
  336. for(int i=0;i<dof;i++){
  337. P.scal[j*dof+i]*=ker_perm.scal[i];
  338. }
  339. }
  340. }
  341. return P;
  342. }
  343. template <class FMMNode>
  344. Permutation<typename FMMNode::Real_t>& FMM_Pts<FMMNode>::PrecompPerm(Mat_Type type, Perm_Type perm_indx){
  345. //Check if the matrix already exists.
  346. Permutation<Real_t>& P_ = mat->Perm((Mat_Type)type, perm_indx);
  347. if(P_.Dim()!=0) return P_;
  348. size_t m=this->MultipoleOrder();
  349. size_t p_indx=perm_indx % C_Perm;
  350. //Compute the matrix.
  351. Permutation<Real_t> P;
  352. switch (type){
  353. case U2U_Type:
  354. {
  355. Vector<Real_t> scal_exp;
  356. Permutation<Real_t> ker_perm;
  357. if(perm_indx<C_Perm){ // Source permutation
  358. ker_perm=kernel->k_m2m->perm_vec[0 +p_indx];
  359. scal_exp=kernel->k_m2m->src_scal;
  360. }else{ // Target permutation
  361. ker_perm=kernel->k_m2m->perm_vec[0 +p_indx];
  362. scal_exp=kernel->k_m2m->src_scal;
  363. for(size_t i=0;i<scal_exp.Dim();i++) scal_exp[i]=-scal_exp[i];
  364. }
  365. P=equiv_surf_perm(m, p_indx, ker_perm, (this->ScaleInvar()?&scal_exp:NULL));
  366. break;
  367. }
  368. case D2D_Type:
  369. {
  370. Vector<Real_t> scal_exp;
  371. Permutation<Real_t> ker_perm;
  372. if(perm_indx<C_Perm){ // Source permutation
  373. ker_perm=kernel->k_l2l->perm_vec[C_Perm+p_indx];
  374. scal_exp=kernel->k_l2l->trg_scal;
  375. for(size_t i=0;i<scal_exp.Dim();i++) scal_exp[i]=-scal_exp[i];
  376. }else{ // Target permutation
  377. ker_perm=kernel->k_l2l->perm_vec[C_Perm+p_indx];
  378. scal_exp=kernel->k_l2l->trg_scal;
  379. }
  380. P=equiv_surf_perm(m, p_indx, ker_perm, (this->ScaleInvar()?&scal_exp:NULL));
  381. break;
  382. }
  383. default:
  384. break;
  385. }
  386. //Save the matrix for future use.
  387. #pragma omp critical (PRECOMP_MATRIX_PTS)
  388. {
  389. if(P_.Dim()==0) P_=P;
  390. }
  391. return P_;
  392. }
  393. template <class FMMNode>
  394. Matrix<typename FMMNode::Real_t>& FMM_Pts<FMMNode>::Precomp(int level, Mat_Type type, size_t mat_indx){
  395. if(this->ScaleInvar()) level=0;
  396. //Check if the matrix already exists.
  397. Matrix<Real_t>& M_ = this->mat->Mat(level, type, mat_indx);
  398. if(M_.Dim(0)!=0 && M_.Dim(1)!=0) return M_;
  399. else{ //Compute matrix from symmetry class (if possible).
  400. size_t class_indx = this->interac_list.InteracClass(type, mat_indx);
  401. if(class_indx!=mat_indx){
  402. Matrix<Real_t>& M0 = this->Precomp(level, type, class_indx);
  403. if(M0.Dim(0)==0 || M0.Dim(1)==0) return M_;
  404. for(size_t i=0;i<Perm_Count;i++) this->PrecompPerm(type, (Perm_Type) i);
  405. Permutation<Real_t>& Pr = this->interac_list.Perm_R(level, type, mat_indx);
  406. Permutation<Real_t>& Pc = this->interac_list.Perm_C(level, type, mat_indx);
  407. if(Pr.Dim()>0 && Pc.Dim()>0 && M0.Dim(0)>0 && M0.Dim(1)>0) return M_;
  408. }
  409. }
  410. //Compute the matrix.
  411. Matrix<Real_t> M;
  412. //int omp_p=omp_get_max_threads();
  413. switch (type){
  414. case UC2UE0_Type:
  415. {
  416. if(MultipoleOrder()==0) break;
  417. const int* ker_dim=kernel->k_m2m->ker_dim;
  418. // Coord of upward check surface
  419. Real_t c[3]={0,0,0};
  420. std::vector<Real_t> uc_coord=u_check_surf(MultipoleOrder(),c,level);
  421. size_t n_uc=uc_coord.size()/3;
  422. // Coord of upward equivalent surface
  423. std::vector<Real_t> ue_coord=u_equiv_surf(MultipoleOrder(),c,level);
  424. size_t n_ue=ue_coord.size()/3;
  425. // Evaluate potential at check surface due to equivalent surface.
  426. Matrix<Real_t> M_e2c(n_ue*ker_dim[0],n_uc*ker_dim[1]);
  427. kernel->k_m2m->BuildMatrix(&ue_coord[0], n_ue,
  428. &uc_coord[0], n_uc, &(M_e2c[0][0]));
  429. Matrix<Real_t> U,S,V;
  430. M_e2c.SVD(U,S,V);
  431. Real_t eps=1, max_S=0;
  432. while(eps*(Real_t)0.5+(Real_t)1.0>1.0) eps*=0.5;
  433. for(size_t i=0;i<std::min(S.Dim(0),S.Dim(1));i++){
  434. if(fabs(S[i][i])>max_S) max_S=fabs(S[i][i]);
  435. }
  436. for(size_t i=0;i<S.Dim(0);i++) S[i][i]=(S[i][i]>eps*max_S*4?1.0/S[i][i]:0.0);
  437. M=V.Transpose()*S;//*U.Transpose();
  438. break;
  439. }
  440. case UC2UE1_Type:
  441. {
  442. if(MultipoleOrder()==0) break;
  443. const int* ker_dim=kernel->k_m2m->ker_dim;
  444. // Coord of upward check surface
  445. Real_t c[3]={0,0,0};
  446. std::vector<Real_t> uc_coord=u_check_surf(MultipoleOrder(),c,level);
  447. size_t n_uc=uc_coord.size()/3;
  448. // Coord of upward equivalent surface
  449. std::vector<Real_t> ue_coord=u_equiv_surf(MultipoleOrder(),c,level);
  450. size_t n_ue=ue_coord.size()/3;
  451. // Evaluate potential at check surface due to equivalent surface.
  452. Matrix<Real_t> M_e2c(n_ue*ker_dim[0],n_uc*ker_dim[1]);
  453. kernel->k_m2m->BuildMatrix(&ue_coord[0], n_ue,
  454. &uc_coord[0], n_uc, &(M_e2c[0][0]));
  455. Matrix<Real_t> U,S,V;
  456. M_e2c.SVD(U,S,V);
  457. M=U.Transpose();
  458. break;
  459. }
  460. case DC2DE0_Type:
  461. {
  462. if(MultipoleOrder()==0) break;
  463. const int* ker_dim=kernel->k_l2l->ker_dim;
  464. // Coord of downward check surface
  465. Real_t c[3]={0,0,0};
  466. std::vector<Real_t> check_surf=d_check_surf(MultipoleOrder(),c,level);
  467. size_t n_ch=check_surf.size()/3;
  468. // Coord of downward equivalent surface
  469. std::vector<Real_t> equiv_surf=d_equiv_surf(MultipoleOrder(),c,level);
  470. size_t n_eq=equiv_surf.size()/3;
  471. // Evaluate potential at check surface due to equivalent surface.
  472. Matrix<Real_t> M_e2c(n_eq*ker_dim[0],n_ch*ker_dim[1]);
  473. kernel->k_l2l->BuildMatrix(&equiv_surf[0], n_eq,
  474. &check_surf[0], n_ch, &(M_e2c[0][0]));
  475. Matrix<Real_t> U,S,V;
  476. M_e2c.SVD(U,S,V);
  477. Real_t eps=1, max_S=0;
  478. while(eps*(Real_t)0.5+(Real_t)1.0>1.0) eps*=0.5;
  479. for(size_t i=0;i<std::min(S.Dim(0),S.Dim(1));i++){
  480. if(fabs(S[i][i])>max_S) max_S=fabs(S[i][i]);
  481. }
  482. for(size_t i=0;i<S.Dim(0);i++) S[i][i]=(S[i][i]>eps*max_S*4?1.0/S[i][i]:0.0);
  483. M=V.Transpose()*S;//*U.Transpose();
  484. break;
  485. }
  486. case DC2DE1_Type:
  487. {
  488. if(MultipoleOrder()==0) break;
  489. const int* ker_dim=kernel->k_l2l->ker_dim;
  490. // Coord of downward check surface
  491. Real_t c[3]={0,0,0};
  492. std::vector<Real_t> check_surf=d_check_surf(MultipoleOrder(),c,level);
  493. size_t n_ch=check_surf.size()/3;
  494. // Coord of downward equivalent surface
  495. std::vector<Real_t> equiv_surf=d_equiv_surf(MultipoleOrder(),c,level);
  496. size_t n_eq=equiv_surf.size()/3;
  497. // Evaluate potential at check surface due to equivalent surface.
  498. Matrix<Real_t> M_e2c(n_eq*ker_dim[0],n_ch*ker_dim[1]);
  499. kernel->k_l2l->BuildMatrix(&equiv_surf[0], n_eq,
  500. &check_surf[0], n_ch, &(M_e2c[0][0]));
  501. Matrix<Real_t> U,S,V;
  502. M_e2c.SVD(U,S,V);
  503. M=U.Transpose();
  504. break;
  505. }
  506. case U2U_Type:
  507. {
  508. if(MultipoleOrder()==0) break;
  509. const int* ker_dim=kernel->k_m2m->ker_dim;
  510. // Coord of upward check surface
  511. Real_t c[3]={0,0,0};
  512. std::vector<Real_t> check_surf=u_check_surf(MultipoleOrder(),c,level);
  513. size_t n_uc=check_surf.size()/3;
  514. // Coord of child's upward equivalent surface
  515. Real_t s=pow(0.5,(level+2));
  516. int* coord=interac_list.RelativeCoord(type,mat_indx);
  517. Real_t child_coord[3]={(coord[0]+1)*s,(coord[1]+1)*s,(coord[2]+1)*s};
  518. std::vector<Real_t> equiv_surf=u_equiv_surf(MultipoleOrder(),child_coord,level+1);
  519. size_t n_ue=equiv_surf.size()/3;
  520. // Evaluate potential at check surface due to equivalent surface.
  521. Matrix<Real_t> M_ce2c(n_ue*ker_dim[0],n_uc*ker_dim[1]);
  522. kernel->k_m2m->BuildMatrix(&equiv_surf[0], n_ue,
  523. &check_surf[0], n_uc, &(M_ce2c[0][0]));
  524. Matrix<Real_t>& M_c2e0 = Precomp(level, UC2UE0_Type, 0);
  525. Matrix<Real_t>& M_c2e1 = Precomp(level, UC2UE1_Type, 0);
  526. M=(M_ce2c*M_c2e0)*M_c2e1;
  527. break;
  528. }
  529. case D2D_Type:
  530. {
  531. if(MultipoleOrder()==0) break;
  532. const int* ker_dim=kernel->k_l2l->ker_dim;
  533. // Coord of downward check surface
  534. Real_t s=pow(0.5,level+1);
  535. int* coord=interac_list.RelativeCoord(type,mat_indx);
  536. Real_t c[3]={(coord[0]+1)*s,(coord[1]+1)*s,(coord[2]+1)*s};
  537. std::vector<Real_t> check_surf=d_check_surf(MultipoleOrder(),c,level);
  538. size_t n_dc=check_surf.size()/3;
  539. // Coord of parent's downward equivalent surface
  540. Real_t parent_coord[3]={0,0,0};
  541. std::vector<Real_t> equiv_surf=d_equiv_surf(MultipoleOrder(),parent_coord,level-1);
  542. size_t n_de=equiv_surf.size()/3;
  543. // Evaluate potential at check surface due to equivalent surface.
  544. Matrix<Real_t> M_pe2c(n_de*ker_dim[0],n_dc*ker_dim[1]);
  545. kernel->k_l2l->BuildMatrix(&equiv_surf[0], n_de,
  546. &check_surf[0], n_dc, &(M_pe2c[0][0]));
  547. Matrix<Real_t> M_c2e0=Precomp(level-1,DC2DE0_Type,0);
  548. Matrix<Real_t> M_c2e1=Precomp(level-1,DC2DE1_Type,0);
  549. if(ScaleInvar()){ // Scale M_c2e0 for level-1
  550. Permutation<Real_t> ker_perm=this->kernel->k_l2l->perm_vec[C_Perm+Scaling];
  551. Vector<Real_t> scal_exp=this->kernel->k_l2l->trg_scal;
  552. Permutation<Real_t> P=equiv_surf_perm(MultipoleOrder(), Scaling, ker_perm, &scal_exp);
  553. M_c2e0=P*M_c2e0;
  554. }
  555. if(ScaleInvar()){ // Scale M_c2e1 for level-1
  556. Permutation<Real_t> ker_perm=this->kernel->k_l2l->perm_vec[0 +Scaling];
  557. Vector<Real_t> scal_exp=this->kernel->k_l2l->src_scal;
  558. Permutation<Real_t> P=equiv_surf_perm(MultipoleOrder(), Scaling, ker_perm, &scal_exp);
  559. M_c2e1=M_c2e1*P;
  560. }
  561. M=M_c2e0*(M_c2e1*M_pe2c);
  562. break;
  563. }
  564. case D2T_Type:
  565. {
  566. if(MultipoleOrder()==0) break;
  567. const int* ker_dim=kernel->k_l2t->ker_dim;
  568. std::vector<Real_t>& rel_trg_coord=mat->RelativeTrgCoord();
  569. // Coord of target points
  570. Real_t r=pow(0.5,level);
  571. size_t n_trg=rel_trg_coord.size()/3;
  572. std::vector<Real_t> trg_coord(n_trg*3);
  573. for(size_t i=0;i<n_trg*COORD_DIM;i++) trg_coord[i]=rel_trg_coord[i]*r;
  574. // Coord of downward equivalent surface
  575. Real_t c[3]={0,0,0};
  576. std::vector<Real_t> equiv_surf=d_equiv_surf(MultipoleOrder(),c,level);
  577. size_t n_eq=equiv_surf.size()/3;
  578. // Evaluate potential at target points due to equivalent surface.
  579. {
  580. M .Resize(n_eq*ker_dim [0], n_trg*ker_dim [1]);
  581. kernel->k_l2t->BuildMatrix(&equiv_surf[0], n_eq, &trg_coord[0], n_trg, &(M [0][0]));
  582. }
  583. Matrix<Real_t>& M_c2e0=Precomp(level,DC2DE0_Type,0);
  584. Matrix<Real_t>& M_c2e1=Precomp(level,DC2DE1_Type,0);
  585. M=M_c2e0*(M_c2e1*M);
  586. break;
  587. }
  588. case V_Type:
  589. {
  590. if(MultipoleOrder()==0) break;
  591. const int* ker_dim=kernel->k_m2l->ker_dim;
  592. int n1=MultipoleOrder()*2;
  593. int n3 =n1*n1*n1;
  594. int n3_=n1*n1*(n1/2+1);
  595. //Compute the matrix.
  596. Real_t s=pow(0.5,level);
  597. int* coord2=interac_list.RelativeCoord(type,mat_indx);
  598. Real_t coord_diff[3]={coord2[0]*s,coord2[1]*s,coord2[2]*s};
  599. //Evaluate potential.
  600. std::vector<Real_t> r_trg(COORD_DIM,0.0);
  601. std::vector<Real_t> conv_poten(n3*ker_dim[0]*ker_dim[1]);
  602. std::vector<Real_t> conv_coord=conv_grid(MultipoleOrder(),coord_diff,level);
  603. kernel->k_m2l->BuildMatrix(&conv_coord[0],n3,&r_trg[0],1,&conv_poten[0]);
  604. //Rearrange data.
  605. Matrix<Real_t> M_conv(n3,ker_dim[0]*ker_dim[1],&conv_poten[0],false);
  606. M_conv=M_conv.Transpose();
  607. //Compute FFTW plan.
  608. int nnn[3]={n1,n1,n1};
  609. Real_t *fftw_in, *fftw_out;
  610. fftw_in = mem::aligned_new<Real_t>( n3 *ker_dim[0]*ker_dim[1]*sizeof(Real_t));
  611. fftw_out = mem::aligned_new<Real_t>(2*n3_*ker_dim[0]*ker_dim[1]*sizeof(Real_t));
  612. #pragma omp critical (FFTW_PLAN)
  613. {
  614. if (!vprecomp_fft_flag){
  615. vprecomp_fftplan = FFTW_t<Real_t>::fft_plan_many_dft_r2c(COORD_DIM, nnn, ker_dim[0]*ker_dim[1],
  616. (Real_t*)fftw_in, NULL, 1, n3, (typename FFTW_t<Real_t>::cplx*) fftw_out, NULL, 1, n3_);
  617. vprecomp_fft_flag=true;
  618. }
  619. }
  620. //Compute FFT.
  621. mem::memcopy(fftw_in, &conv_poten[0], n3*ker_dim[0]*ker_dim[1]*sizeof(Real_t));
  622. FFTW_t<Real_t>::fft_execute_dft_r2c(vprecomp_fftplan, (Real_t*)fftw_in, (typename FFTW_t<Real_t>::cplx*)(fftw_out));
  623. Matrix<Real_t> M_(2*n3_*ker_dim[0]*ker_dim[1],1,(Real_t*)fftw_out,false);
  624. M=M_;
  625. //Free memory.
  626. mem::aligned_delete<Real_t>(fftw_in);
  627. mem::aligned_delete<Real_t>(fftw_out);
  628. break;
  629. }
  630. case V1_Type:
  631. {
  632. if(MultipoleOrder()==0) break;
  633. const int* ker_dim=kernel->k_m2l->ker_dim;
  634. size_t mat_cnt =interac_list.ListCount( V_Type);
  635. for(size_t k=0;k<mat_cnt;k++) Precomp(level, V_Type, k);
  636. const size_t chld_cnt=1UL<<COORD_DIM;
  637. size_t n1=MultipoleOrder()*2;
  638. size_t M_dim=n1*n1*(n1/2+1);
  639. size_t n3=n1*n1*n1;
  640. Vector<Real_t> zero_vec(M_dim*ker_dim[0]*ker_dim[1]*2);
  641. zero_vec.SetZero();
  642. Vector<Real_t*> M_ptr(chld_cnt*chld_cnt);
  643. for(size_t i=0;i<chld_cnt*chld_cnt;i++) M_ptr[i]=&zero_vec[0];
  644. int* rel_coord_=interac_list.RelativeCoord(V1_Type, mat_indx);
  645. for(int j1=0;j1<chld_cnt;j1++)
  646. for(int j2=0;j2<chld_cnt;j2++){
  647. int rel_coord[3]={rel_coord_[0]*2-(j1/1)%2+(j2/1)%2,
  648. rel_coord_[1]*2-(j1/2)%2+(j2/2)%2,
  649. rel_coord_[2]*2-(j1/4)%2+(j2/4)%2};
  650. for(size_t k=0;k<mat_cnt;k++){
  651. int* ref_coord=interac_list.RelativeCoord(V_Type, k);
  652. if(ref_coord[0]==rel_coord[0] &&
  653. ref_coord[1]==rel_coord[1] &&
  654. ref_coord[2]==rel_coord[2]){
  655. Matrix<Real_t>& M = this->mat->Mat(level, V_Type, k);
  656. M_ptr[j2*chld_cnt+j1]=&M[0][0];
  657. break;
  658. }
  659. }
  660. }
  661. // Build matrix ker_dim0 x ker_dim1 x M_dim x 8 x 8
  662. M.Resize(ker_dim[0]*ker_dim[1]*M_dim, 2*chld_cnt*chld_cnt);
  663. for(int j=0;j<ker_dim[0]*ker_dim[1]*M_dim;j++){
  664. for(size_t k=0;k<chld_cnt*chld_cnt;k++){
  665. M[j][k*2+0]=M_ptr[k][j*2+0]/n3;
  666. M[j][k*2+1]=M_ptr[k][j*2+1]/n3;
  667. }
  668. }
  669. break;
  670. }
  671. case W_Type:
  672. {
  673. if(MultipoleOrder()==0) break;
  674. const int* ker_dim=kernel->k_m2t->ker_dim;
  675. std::vector<Real_t>& rel_trg_coord=mat->RelativeTrgCoord();
  676. // Coord of target points
  677. Real_t s=pow(0.5,level);
  678. size_t n_trg=rel_trg_coord.size()/3;
  679. std::vector<Real_t> trg_coord(n_trg*3);
  680. for(size_t j=0;j<n_trg*COORD_DIM;j++) trg_coord[j]=rel_trg_coord[j]*s;
  681. // Coord of downward equivalent surface
  682. int* coord2=interac_list.RelativeCoord(type,mat_indx);
  683. Real_t c[3]={(Real_t)((coord2[0]+1)*s*0.25),(Real_t)((coord2[1]+1)*s*0.25),(Real_t)((coord2[2]+1)*s*0.25)};
  684. std::vector<Real_t> equiv_surf=u_equiv_surf(MultipoleOrder(),c,level+1);
  685. size_t n_eq=equiv_surf.size()/3;
  686. // Evaluate potential at target points due to equivalent surface.
  687. {
  688. M .Resize(n_eq*ker_dim [0],n_trg*ker_dim [1]);
  689. kernel->k_m2t->BuildMatrix(&equiv_surf[0], n_eq, &trg_coord[0], n_trg, &(M [0][0]));
  690. }
  691. break;
  692. }
  693. case BC_Type:
  694. {
  695. if(!this->ScaleInvar() || MultipoleOrder()==0) break;
  696. if(kernel->k_m2l->ker_dim[0]!=kernel->k_m2m->ker_dim[0]) break;
  697. if(kernel->k_m2l->ker_dim[1]!=kernel->k_l2l->ker_dim[1]) break;
  698. const int* ker_dim=kernel->k_m2l->ker_dim;
  699. size_t mat_cnt_m2m=interac_list.ListCount(U2U_Type);
  700. size_t n_surf=(6*(MultipoleOrder()-1)*(MultipoleOrder()-1)+2); //Total number of points.
  701. if((M.Dim(0)!=n_surf*ker_dim[0] || M.Dim(1)!=n_surf*ker_dim[1]) && level==0){
  702. Matrix<Real_t> M_m2m[BC_LEVELS+1];
  703. Matrix<Real_t> M_m2l[BC_LEVELS+1];
  704. Matrix<Real_t> M_l2l[BC_LEVELS+1];
  705. Matrix<Real_t> M_equiv_zero_avg(n_surf*ker_dim[0],n_surf*ker_dim[0]);
  706. Matrix<Real_t> M_check_zero_avg(n_surf*ker_dim[1],n_surf*ker_dim[1]);
  707. { // Set average multipole charge to zero. (improves stability for large BC_LEVELS)
  708. M_equiv_zero_avg.SetZero();
  709. for(size_t i=0;i<n_surf*ker_dim[0];i++)
  710. M_equiv_zero_avg[i][i]+=1;
  711. for(size_t i=0;i<n_surf;i++)
  712. for(size_t j=0;j<n_surf;j++)
  713. for(size_t k=0;k<ker_dim[0];k++)
  714. M_equiv_zero_avg[i*ker_dim[0]+k][j*ker_dim[0]+k]-=1.0/n_surf;
  715. }
  716. { // Set average check potential to zero. (improves stability for large BC_LEVELS)
  717. M_check_zero_avg.SetZero();
  718. for(size_t i=0;i<n_surf*ker_dim[1];i++)
  719. M_check_zero_avg[i][i]+=1;
  720. for(size_t i=0;i<n_surf;i++)
  721. for(size_t j=0;j<n_surf;j++)
  722. for(size_t k=0;k<ker_dim[1];k++)
  723. M_check_zero_avg[i*ker_dim[1]+k][j*ker_dim[1]+k]-=1.0/n_surf;
  724. }
  725. for(int level=0; level>=-BC_LEVELS; level--){
  726. { // Compute M_l2l
  727. this->Precomp(level, D2D_Type, 0);
  728. Permutation<Real_t>& Pr = this->interac_list.Perm_R(level, D2D_Type, 0);
  729. Permutation<Real_t>& Pc = this->interac_list.Perm_C(level, D2D_Type, 0);
  730. M_l2l[-level] = M_check_zero_avg * Pr * this->Precomp(level, D2D_Type, this->interac_list.InteracClass(D2D_Type, 0)) * Pc * M_check_zero_avg;
  731. assert(M_l2l[-level].Dim(0)>0 && M_l2l[-level].Dim(1)>0);
  732. }
  733. // Compute M_m2m
  734. for(size_t mat_indx=0; mat_indx<mat_cnt_m2m; mat_indx++){
  735. this->Precomp(level, U2U_Type, mat_indx);
  736. Permutation<Real_t>& Pr = this->interac_list.Perm_R(level, U2U_Type, mat_indx);
  737. Permutation<Real_t>& Pc = this->interac_list.Perm_C(level, U2U_Type, mat_indx);
  738. Matrix<Real_t> M = Pr * this->Precomp(level, U2U_Type, this->interac_list.InteracClass(U2U_Type, mat_indx)) * Pc;
  739. assert(M.Dim(0)>0 && M.Dim(1)>0);
  740. if(mat_indx==0) M_m2m[-level] = M_equiv_zero_avg*M*M_equiv_zero_avg;
  741. else M_m2m[-level] += M_equiv_zero_avg*M*M_equiv_zero_avg;
  742. }
  743. // Compute M_m2l
  744. if(!ScaleInvar() || level==0){
  745. Real_t s=(1UL<<(-level));
  746. Real_t dc_coord[3]={0,0,0};
  747. std::vector<Real_t> trg_coord=d_check_surf(MultipoleOrder(), dc_coord, level);
  748. Matrix<Real_t> M_ue2dc(n_surf*ker_dim[0], n_surf*ker_dim[1]); M_ue2dc.SetZero();
  749. for(int x0=-2;x0<4;x0++)
  750. for(int x1=-2;x1<4;x1++)
  751. for(int x2=-2;x2<4;x2++)
  752. if(abs(x0)>1 || abs(x1)>1 || abs(x2)>1){
  753. Real_t ue_coord[3]={x0*s, x1*s, x2*s};
  754. std::vector<Real_t> src_coord=u_equiv_surf(MultipoleOrder(), ue_coord, level);
  755. Matrix<Real_t> M_tmp(n_surf*ker_dim[0], n_surf*ker_dim[1]);
  756. kernel->k_m2l->BuildMatrix(&src_coord[0], n_surf,
  757. &trg_coord[0], n_surf, &(M_tmp[0][0]));
  758. M_ue2dc+=M_tmp;
  759. }
  760. M_m2l[-level]=M_check_zero_avg*M_ue2dc * M_check_zero_avg;
  761. }else{
  762. M_m2l[-level]=M_equiv_zero_avg * M_m2l[-level-1] * M_check_zero_avg;
  763. if(ScaleInvar()){ // Scale M_m2l
  764. Permutation<Real_t> ker_perm=this->kernel->k_m2l->perm_vec[0 +Scaling];
  765. Vector<Real_t> scal_exp=this->kernel->k_m2l->src_scal;
  766. for(size_t i=0;i<scal_exp.Dim();i++) scal_exp[i]=-scal_exp[i];
  767. Permutation<Real_t> P=equiv_surf_perm(MultipoleOrder(), Scaling, ker_perm, &scal_exp);
  768. M_m2l[-level]=P*M_m2l[-level];
  769. }
  770. if(ScaleInvar()){ // Scale M_m2l
  771. Permutation<Real_t> ker_perm=this->kernel->k_m2l->perm_vec[C_Perm+Scaling];
  772. Vector<Real_t> scal_exp=this->kernel->k_m2l->trg_scal;
  773. for(size_t i=0;i<scal_exp.Dim();i++) scal_exp[i]=-scal_exp[i];
  774. Permutation<Real_t> P=equiv_surf_perm(MultipoleOrder(), Scaling, ker_perm, &scal_exp);
  775. M_m2l[-level]=M_m2l[-level]*P;
  776. }
  777. }
  778. }
  779. for(int level=-BC_LEVELS;level<=0;level++){
  780. if(level==-BC_LEVELS) M = M_m2l[-level];
  781. else M = M_equiv_zero_avg * (M_m2l[-level] + M_m2m[-level]*M*M_l2l[-level]) * M_equiv_zero_avg;
  782. }
  783. { // ax+by+cz+d correction.
  784. std::vector<Real_t> corner_pts;
  785. corner_pts.push_back(0); corner_pts.push_back(0); corner_pts.push_back(0);
  786. corner_pts.push_back(1); corner_pts.push_back(0); corner_pts.push_back(0);
  787. corner_pts.push_back(0); corner_pts.push_back(1); corner_pts.push_back(0);
  788. corner_pts.push_back(0); corner_pts.push_back(0); corner_pts.push_back(1);
  789. size_t n_corner=corner_pts.size()/COORD_DIM;
  790. // Coord of downward equivalent surface
  791. Real_t c[3]={0,0,0};
  792. std::vector<Real_t> up_equiv_surf=u_equiv_surf(MultipoleOrder(),c,0);
  793. std::vector<Real_t> dn_equiv_surf=d_equiv_surf(MultipoleOrder(),c,0);
  794. std::vector<Real_t> dn_check_surf=d_check_surf(MultipoleOrder(),c,0);
  795. Matrix<Real_t> M_err;
  796. { // Evaluate potential at corner due to upward and dnward equivalent surface.
  797. { // Error from local expansion.
  798. Matrix<Real_t> M_e2pt(n_surf*ker_dim[0],n_corner*ker_dim[1]);
  799. kernel->k_m2l->BuildMatrix(&dn_equiv_surf[0], n_surf,
  800. &corner_pts[0], n_corner, &(M_e2pt[0][0]));
  801. Matrix<Real_t>& M_dc2de0 = Precomp(0, DC2DE0_Type, 0);
  802. Matrix<Real_t>& M_dc2de1 = Precomp(0, DC2DE1_Type, 0);
  803. M_err=(M*M_dc2de0)*(M_dc2de1*M_e2pt);
  804. }
  805. for(size_t k=0;k<4;k++){ // Error from colleagues of root.
  806. for(int j0=-1;j0<=1;j0++)
  807. for(int j1=-1;j1<=1;j1++)
  808. for(int j2=-1;j2<=1;j2++){
  809. Real_t pt_coord[3]={corner_pts[k*COORD_DIM+0]-j0,
  810. corner_pts[k*COORD_DIM+1]-j1,
  811. corner_pts[k*COORD_DIM+2]-j2};
  812. if(fabs(pt_coord[0]-0.5)>1.0 || fabs(pt_coord[1]-0.5)>1.0 || fabs(pt_coord[2]-0.5)>1.0){
  813. Matrix<Real_t> M_e2pt(n_surf*ker_dim[0],ker_dim[1]);
  814. kernel->k_m2l->BuildMatrix(&up_equiv_surf[0], n_surf,
  815. &pt_coord[0], 1, &(M_e2pt[0][0]));
  816. for(size_t i=0;i<M_e2pt.Dim(0);i++)
  817. for(size_t j=0;j<M_e2pt.Dim(1);j++)
  818. M_err[i][k*ker_dim[1]+j]+=M_e2pt[i][j];
  819. }
  820. }
  821. }
  822. }
  823. Matrix<Real_t> M_grad(M_err.Dim(0),n_surf*ker_dim[1]);
  824. for(size_t i=0;i<M_err.Dim(0);i++)
  825. for(size_t k=0;k<ker_dim[1];k++)
  826. for(size_t j=0;j<n_surf;j++){
  827. M_grad[i][j*ker_dim[1]+k]=(M_err[i][0*ker_dim[1]+k] )*1.0 +
  828. (M_err[i][1*ker_dim[1]+k]-M_err[i][0*ker_dim[1]+k])*dn_check_surf[j*COORD_DIM+0]+
  829. (M_err[i][2*ker_dim[1]+k]-M_err[i][0*ker_dim[1]+k])*dn_check_surf[j*COORD_DIM+1]+
  830. (M_err[i][3*ker_dim[1]+k]-M_err[i][0*ker_dim[1]+k])*dn_check_surf[j*COORD_DIM+2];
  831. }
  832. M-=M_grad;
  833. }
  834. if(!this->ScaleInvar()){ // Free memory
  835. Mat_Type type=D2D_Type;
  836. for(int l=-BC_LEVELS;l<0;l++)
  837. for(size_t indx=0;indx<this->interac_list.ListCount(type);indx++){
  838. Matrix<Real_t>& M=this->mat->Mat(l, type, indx);
  839. M.Resize(0,0);
  840. }
  841. type=U2U_Type;
  842. for(int l=-BC_LEVELS;l<0;l++)
  843. for(size_t indx=0;indx<this->interac_list.ListCount(type);indx++){
  844. Matrix<Real_t>& M=this->mat->Mat(l, type, indx);
  845. M.Resize(0,0);
  846. }
  847. type=DC2DE0_Type;
  848. for(int l=-BC_LEVELS;l<0;l++)
  849. for(size_t indx=0;indx<this->interac_list.ListCount(type);indx++){
  850. Matrix<Real_t>& M=this->mat->Mat(l, type, indx);
  851. M.Resize(0,0);
  852. }
  853. type=DC2DE1_Type;
  854. for(int l=-BC_LEVELS;l<0;l++)
  855. for(size_t indx=0;indx<this->interac_list.ListCount(type);indx++){
  856. Matrix<Real_t>& M=this->mat->Mat(l, type, indx);
  857. M.Resize(0,0);
  858. }
  859. type=UC2UE0_Type;
  860. for(int l=-BC_LEVELS;l<0;l++)
  861. for(size_t indx=0;indx<this->interac_list.ListCount(type);indx++){
  862. Matrix<Real_t>& M=this->mat->Mat(l, type, indx);
  863. M.Resize(0,0);
  864. }
  865. type=UC2UE1_Type;
  866. for(int l=-BC_LEVELS;l<0;l++)
  867. for(size_t indx=0;indx<this->interac_list.ListCount(type);indx++){
  868. Matrix<Real_t>& M=this->mat->Mat(l, type, indx);
  869. M.Resize(0,0);
  870. }
  871. }
  872. }
  873. break;
  874. }
  875. default:
  876. break;
  877. }
  878. //Save the matrix for future use.
  879. #pragma omp critical (PRECOMP_MATRIX_PTS)
  880. if(M_.Dim(0)==0 && M_.Dim(1)==0){
  881. M_=M;
  882. /*
  883. M_.Resize(M.Dim(0),M.Dim(1));
  884. int dof=ker_dim[0]*ker_dim[1];
  885. for(int j=0;j<dof;j++){
  886. size_t a=(M.Dim(0)*M.Dim(1)* j )/dof;
  887. size_t b=(M.Dim(0)*M.Dim(1)*(j+1))/dof;
  888. #pragma omp parallel for // NUMA
  889. for(int tid=0;tid<omp_p;tid++){
  890. size_t a_=a+((b-a)* tid )/omp_p;
  891. size_t b_=a+((b-a)*(tid+1))/omp_p;
  892. mem::memcopy(&M_[0][a_], &M[0][a_], (b_-a_)*sizeof(Real_t));
  893. }
  894. }
  895. */
  896. }
  897. return M_;
  898. }
  899. template <class FMMNode>
  900. void FMM_Pts<FMMNode>::PrecompAll(Mat_Type type, int level){
  901. if(level==-1){
  902. for(int l=0;l<MAX_DEPTH;l++){
  903. PrecompAll(type, l);
  904. }
  905. return;
  906. }
  907. //Compute basic permutations.
  908. for(size_t i=0;i<Perm_Count;i++)
  909. this->PrecompPerm(type, (Perm_Type) i);
  910. {
  911. //Allocate matrices.
  912. size_t mat_cnt=interac_list.ListCount((Mat_Type)type);
  913. mat->Mat(level, (Mat_Type)type, mat_cnt-1);
  914. { // Compute InteracClass matrices.
  915. std::vector<size_t> indx_lst;
  916. for(size_t i=0; i<mat_cnt; i++){
  917. if(interac_list.InteracClass((Mat_Type)type,i)==i)
  918. indx_lst.push_back(i);
  919. }
  920. //Compute Transformations.
  921. //#pragma omp parallel for //lets use fine grained parallelism
  922. for(size_t i=0; i<indx_lst.size(); i++){
  923. Precomp(level, (Mat_Type)type, indx_lst[i]);
  924. }
  925. }
  926. //#pragma omp parallel for //lets use fine grained parallelism
  927. for(size_t mat_indx=0;mat_indx<mat_cnt;mat_indx++){
  928. Matrix<Real_t>& M0=interac_list.ClassMat(level,(Mat_Type)type,mat_indx);
  929. Permutation<Real_t>& pr=interac_list.Perm_R(level, (Mat_Type)type, mat_indx);
  930. Permutation<Real_t>& pc=interac_list.Perm_C(level, (Mat_Type)type, mat_indx);
  931. if(pr.Dim()!=M0.Dim(0) || pc.Dim()!=M0.Dim(1)) Precomp(level, (Mat_Type)type, mat_indx);
  932. }
  933. }
  934. }
  935. template <class FMMNode>
  936. void FMM_Pts<FMMNode>::CollectNodeData(FMMTree_t* tree, std::vector<FMMNode*>& node, std::vector<Matrix<Real_t> >& buff_list, std::vector<Vector<FMMNode_t*> >& n_list, std::vector<std::vector<Vector<Real_t>* > > vec_list){
  937. if(buff_list.size()<7) buff_list.resize(7);
  938. if( n_list.size()<7) n_list.resize(7);
  939. if( vec_list.size()<7) vec_list.resize(7);
  940. int omp_p=omp_get_max_threads();
  941. if(node.size()==0) return;
  942. {// 0. upward_equiv
  943. int indx=0;
  944. size_t vec_sz;
  945. { // Set vec_sz
  946. Matrix<Real_t>& M_uc2ue = this->interac_list.ClassMat(0, UC2UE1_Type, 0);
  947. vec_sz=M_uc2ue.Dim(1);
  948. }
  949. std::vector< FMMNode* > node_lst;
  950. {// Construct node_lst
  951. node_lst.clear();
  952. std::vector<std::vector< FMMNode* > > node_lst_(MAX_DEPTH+1);
  953. FMMNode_t* r_node=NULL;
  954. for(size_t i=0;i<node.size();i++){
  955. if(!node[i]->IsLeaf()){
  956. node_lst_[node[i]->Depth()].push_back(node[i]);
  957. }else{
  958. node[i]->pt_cnt[0]+=node[i]-> src_coord.Dim()/COORD_DIM;
  959. node[i]->pt_cnt[0]+=node[i]->surf_coord.Dim()/COORD_DIM;
  960. if(node[i]->IsGhost()) node[i]->pt_cnt[0]++; // TODO: temporary fix, pt_cnt not known for ghost nodes
  961. }
  962. if(node[i]->Depth()==0) r_node=node[i];
  963. }
  964. size_t chld_cnt=1UL<<COORD_DIM;
  965. for(int i=MAX_DEPTH;i>=0;i--){
  966. for(size_t j=0;j<node_lst_[i].size();j++){
  967. for(size_t k=0;k<chld_cnt;k++){
  968. FMMNode_t* node=(FMMNode_t*)node_lst_[i][j]->Child(k);
  969. node_lst_[i][j]->pt_cnt[0]+=node->pt_cnt[0];
  970. }
  971. }
  972. }
  973. for(int i=0;i<=MAX_DEPTH;i++){
  974. for(size_t j=0;j<node_lst_[i].size();j++){
  975. if(node_lst_[i][j]->pt_cnt[0])
  976. for(size_t k=0;k<chld_cnt;k++){
  977. FMMNode_t* node=(FMMNode_t*)node_lst_[i][j]->Child(k);
  978. node_lst.push_back(node);
  979. }
  980. }
  981. }
  982. if(r_node!=NULL) node_lst.push_back(r_node);
  983. n_list[indx]=node_lst;
  984. }
  985. std::vector<Vector<Real_t>*>& vec_lst=vec_list[indx];
  986. for(size_t i=0;i<node_lst.size();i++){ // Construct vec_lst
  987. FMMNode_t* node=node_lst[i];
  988. Vector<Real_t>& data_vec=node->FMMData()->upward_equiv;
  989. data_vec.ReInit(vec_sz,NULL,false);
  990. vec_lst.push_back(&data_vec);
  991. }
  992. }
  993. {// 1. dnward_equiv
  994. int indx=1;
  995. size_t vec_sz;
  996. { // Set vec_sz
  997. Matrix<Real_t>& M_dc2de0 = this->interac_list.ClassMat(0, DC2DE0_Type, 0);
  998. vec_sz=M_dc2de0.Dim(0);
  999. }
  1000. std::vector< FMMNode* > node_lst;
  1001. {// Construct node_lst
  1002. node_lst.clear();
  1003. std::vector<std::vector< FMMNode* > > node_lst_(MAX_DEPTH+1);
  1004. FMMNode_t* r_node=NULL;
  1005. for(size_t i=0;i<node.size();i++){
  1006. if(!node[i]->IsLeaf()){
  1007. node_lst_[node[i]->Depth()].push_back(node[i]);
  1008. }else{
  1009. node[i]->pt_cnt[1]+=node[i]->trg_coord.Dim()/COORD_DIM;
  1010. }
  1011. if(node[i]->Depth()==0) r_node=node[i];
  1012. }
  1013. size_t chld_cnt=1UL<<COORD_DIM;
  1014. for(int i=MAX_DEPTH;i>=0;i--){
  1015. for(size_t j=0;j<node_lst_[i].size();j++){
  1016. for(size_t k=0;k<chld_cnt;k++){
  1017. FMMNode_t* node=(FMMNode_t*)node_lst_[i][j]->Child(k);
  1018. node_lst_[i][j]->pt_cnt[1]+=node->pt_cnt[1];
  1019. }
  1020. }
  1021. }
  1022. for(int i=0;i<=MAX_DEPTH;i++){
  1023. for(size_t j=0;j<node_lst_[i].size();j++){
  1024. if(node_lst_[i][j]->pt_cnt[1])
  1025. for(size_t k=0;k<chld_cnt;k++){
  1026. FMMNode_t* node=(FMMNode_t*)node_lst_[i][j]->Child(k);
  1027. node_lst.push_back(node);
  1028. }
  1029. }
  1030. }
  1031. if(r_node!=NULL) node_lst.push_back(r_node);
  1032. n_list[indx]=node_lst;
  1033. }
  1034. std::vector<Vector<Real_t>*>& vec_lst=vec_list[indx];
  1035. for(size_t i=0;i<node_lst.size();i++){ // Construct vec_lst
  1036. FMMNode_t* node=node_lst[i];
  1037. Vector<Real_t>& data_vec=node->FMMData()->dnward_equiv;
  1038. data_vec.ReInit(vec_sz,NULL,false);
  1039. vec_lst.push_back(&data_vec);
  1040. }
  1041. }
  1042. {// 2. upward_equiv_fft
  1043. int indx=2;
  1044. std::vector< FMMNode* > node_lst;
  1045. {
  1046. std::vector<std::vector< FMMNode* > > node_lst_(MAX_DEPTH+1);
  1047. for(size_t i=0;i<node.size();i++)
  1048. if(!node[i]->IsLeaf())
  1049. node_lst_[node[i]->Depth()].push_back(node[i]);
  1050. for(int i=0;i<=MAX_DEPTH;i++)
  1051. for(size_t j=0;j<node_lst_[i].size();j++)
  1052. node_lst.push_back(node_lst_[i][j]);
  1053. }
  1054. n_list[indx]=node_lst;
  1055. }
  1056. {// 3. dnward_check_fft
  1057. int indx=3;
  1058. std::vector< FMMNode* > node_lst;
  1059. {
  1060. std::vector<std::vector< FMMNode* > > node_lst_(MAX_DEPTH+1);
  1061. for(size_t i=0;i<node.size();i++)
  1062. if(!node[i]->IsLeaf() && !node[i]->IsGhost())
  1063. node_lst_[node[i]->Depth()].push_back(node[i]);
  1064. for(int i=0;i<=MAX_DEPTH;i++)
  1065. for(size_t j=0;j<node_lst_[i].size();j++)
  1066. node_lst.push_back(node_lst_[i][j]);
  1067. }
  1068. n_list[indx]=node_lst;
  1069. }
  1070. {// 4. src_val
  1071. int indx=4;
  1072. int src_dof=kernel->ker_dim[0];
  1073. int surf_dof=COORD_DIM+src_dof;
  1074. std::vector< FMMNode* > node_lst;
  1075. for(size_t i=0;i<node.size();i++){// Construct node_lst
  1076. if(node[i]->IsLeaf()){
  1077. node_lst.push_back(node[i]);
  1078. }
  1079. }
  1080. n_list[indx]=node_lst;
  1081. std::vector<Vector<Real_t>*>& vec_lst=vec_list[indx];
  1082. for(size_t i=0;i<node_lst.size();i++){ // Construct vec_lst
  1083. FMMNode_t* node=node_lst[i];
  1084. { // src_value
  1085. Vector<Real_t>& data_vec=node->src_value;
  1086. size_t vec_sz=(node->src_coord.Dim()/COORD_DIM)*src_dof;
  1087. if(data_vec.Dim()!=vec_sz) data_vec.ReInit(vec_sz,NULL,false);
  1088. vec_lst.push_back(&data_vec);
  1089. }
  1090. { // surf_value
  1091. Vector<Real_t>& data_vec=node->surf_value;
  1092. size_t vec_sz=(node->surf_coord.Dim()/COORD_DIM)*surf_dof;
  1093. if(data_vec.Dim()!=vec_sz) data_vec.ReInit(vec_sz,NULL,false);
  1094. vec_lst.push_back(&data_vec);
  1095. }
  1096. }
  1097. }
  1098. {// 5. trg_val
  1099. int indx=5;
  1100. int trg_dof=kernel->ker_dim[1];
  1101. std::vector< FMMNode* > node_lst;
  1102. for(size_t i=0;i<node.size();i++){// Construct node_lst
  1103. if(node[i]->IsLeaf() && !node[i]->IsGhost()){
  1104. node_lst.push_back(node[i]);
  1105. }
  1106. }
  1107. n_list[indx]=node_lst;
  1108. std::vector<Vector<Real_t>*>& vec_lst=vec_list[indx];
  1109. for(size_t i=0;i<node_lst.size();i++){ // Construct vec_lst
  1110. FMMNode_t* node=node_lst[i];
  1111. { // trg_value
  1112. Vector<Real_t>& data_vec=node->trg_value;
  1113. size_t vec_sz=(node->trg_coord.Dim()/COORD_DIM)*trg_dof;
  1114. data_vec.ReInit(vec_sz,NULL,false);
  1115. vec_lst.push_back(&data_vec);
  1116. }
  1117. }
  1118. }
  1119. {// 6. pts_coord
  1120. int indx=6;
  1121. std::vector< FMMNode* > node_lst;
  1122. for(size_t i=0;i<node.size();i++){// Construct node_lst
  1123. if(node[i]->IsLeaf()){
  1124. node_lst.push_back(node[i]);
  1125. }
  1126. }
  1127. n_list[indx]=node_lst;
  1128. std::vector<Vector<Real_t>*>& vec_lst=vec_list[indx];
  1129. for(size_t i=0;i<node_lst.size();i++){ // Construct vec_lst
  1130. FMMNode_t* node=node_lst[i];
  1131. { // src_coord
  1132. Vector<Real_t>& data_vec=node->src_coord;
  1133. vec_lst.push_back(&data_vec);
  1134. }
  1135. { // surf_coord
  1136. Vector<Real_t>& data_vec=node->surf_coord;
  1137. vec_lst.push_back(&data_vec);
  1138. }
  1139. { // trg_coord
  1140. Vector<Real_t>& data_vec=node->trg_coord;
  1141. vec_lst.push_back(&data_vec);
  1142. }
  1143. }
  1144. { // check and equiv surfaces.
  1145. if(tree->upwd_check_surf.size()==0){
  1146. size_t m=MultipoleOrder();
  1147. tree->upwd_check_surf.resize(MAX_DEPTH);
  1148. tree->upwd_equiv_surf.resize(MAX_DEPTH);
  1149. tree->dnwd_check_surf.resize(MAX_DEPTH);
  1150. tree->dnwd_equiv_surf.resize(MAX_DEPTH);
  1151. for(size_t depth=0;depth<MAX_DEPTH;depth++){
  1152. Real_t c[3]={0.0,0.0,0.0};
  1153. tree->upwd_check_surf[depth].ReInit((6*(m-1)*(m-1)+2)*COORD_DIM);
  1154. tree->upwd_equiv_surf[depth].ReInit((6*(m-1)*(m-1)+2)*COORD_DIM);
  1155. tree->dnwd_check_surf[depth].ReInit((6*(m-1)*(m-1)+2)*COORD_DIM);
  1156. tree->dnwd_equiv_surf[depth].ReInit((6*(m-1)*(m-1)+2)*COORD_DIM);
  1157. tree->upwd_check_surf[depth]=u_check_surf(m,c,depth);
  1158. tree->upwd_equiv_surf[depth]=u_equiv_surf(m,c,depth);
  1159. tree->dnwd_check_surf[depth]=d_check_surf(m,c,depth);
  1160. tree->dnwd_equiv_surf[depth]=d_equiv_surf(m,c,depth);
  1161. }
  1162. }
  1163. for(size_t depth=0;depth<MAX_DEPTH;depth++){
  1164. vec_lst.push_back(&tree->upwd_check_surf[depth]);
  1165. vec_lst.push_back(&tree->upwd_equiv_surf[depth]);
  1166. vec_lst.push_back(&tree->dnwd_check_surf[depth]);
  1167. vec_lst.push_back(&tree->dnwd_equiv_surf[depth]);
  1168. }
  1169. }
  1170. }
  1171. // Create extra auxiliary buffer.
  1172. if(buff_list.size()<=vec_list.size()) buff_list.resize(vec_list.size()+1);
  1173. for(size_t indx=0;indx<vec_list.size();indx++){ // Resize buffer
  1174. Matrix<Real_t>& buff=buff_list[indx];
  1175. std::vector<Vector<Real_t>*>& vec_lst= vec_list[indx];
  1176. bool keep_data=(indx==4 || indx==6);
  1177. size_t n_vec=vec_lst.size();
  1178. { // Continue if nothing to be done.
  1179. if(!n_vec) continue;
  1180. if(buff.Dim(0)*buff.Dim(1)>0){
  1181. bool init_buff=false;
  1182. Real_t* buff_start=&buff[0][0];
  1183. Real_t* buff_end=&buff[0][0]+buff.Dim(0)*buff.Dim(1);
  1184. #pragma omp parallel for reduction(||:init_buff)
  1185. for(size_t i=0;i<n_vec;i++){
  1186. if(vec_lst[i]->Dim() && (&(*vec_lst[i])[0]<buff_start || &(*vec_lst[i])[0]>=buff_end)){
  1187. init_buff=true;
  1188. }
  1189. }
  1190. if(!init_buff) continue;
  1191. }
  1192. }
  1193. std::vector<size_t> vec_size(n_vec);
  1194. std::vector<size_t> vec_disp(n_vec);
  1195. if(n_vec){ // Set vec_size and vec_disp
  1196. #pragma omp parallel for
  1197. for(size_t i=0;i<n_vec;i++){ // Set vec_size
  1198. vec_size[i]=vec_lst[i]->Dim();
  1199. }
  1200. vec_disp[0]=0;
  1201. omp_par::scan(&vec_size[0],&vec_disp[0],n_vec);
  1202. }
  1203. size_t buff_size=vec_size[n_vec-1]+vec_disp[n_vec-1];
  1204. if(!buff_size) continue;
  1205. if(keep_data){ // Copy to dev_buffer
  1206. if(dev_buffer.Dim()<buff_size*sizeof(Real_t)){ // Resize dev_buffer
  1207. dev_buffer.ReInit(buff_size*sizeof(Real_t)*1.05);
  1208. }
  1209. #pragma omp parallel for
  1210. for(size_t i=0;i<n_vec;i++){
  1211. if(&(*vec_lst[i])[0]){
  1212. mem::memcopy(((Real_t*)&dev_buffer[0])+vec_disp[i],&(*vec_lst[i])[0],vec_size[i]*sizeof(Real_t));
  1213. }
  1214. }
  1215. }
  1216. if(buff.Dim(0)*buff.Dim(1)<buff_size){ // Resize buff
  1217. buff.ReInit(1,buff_size*1.05);
  1218. }
  1219. if(keep_data){ // Copy to buff (from dev_buffer)
  1220. #pragma omp parallel for
  1221. for(size_t tid=0;tid<omp_p;tid++){
  1222. size_t a=(buff_size*(tid+0))/omp_p;
  1223. size_t b=(buff_size*(tid+1))/omp_p;
  1224. mem::memcopy(&buff[0][0]+a,((Real_t*)&dev_buffer[0])+a,(b-a)*sizeof(Real_t));
  1225. }
  1226. }
  1227. #pragma omp parallel for
  1228. for(size_t i=0;i<n_vec;i++){ // ReInit vectors
  1229. vec_lst[i]->ReInit(vec_size[i],&buff[0][0]+vec_disp[i],false);
  1230. }
  1231. }
  1232. }
  1233. template <class FMMNode>
  1234. void FMM_Pts<FMMNode>::SetupPrecomp(SetupData<Real_t>& setup_data, bool device){
  1235. if(setup_data.precomp_data==NULL || setup_data.level>MAX_DEPTH) return;
  1236. Profile::Tic("SetupPrecomp",&this->comm,true,25);
  1237. { // Build precomp_data
  1238. size_t precomp_offset=0;
  1239. int level=setup_data.level;
  1240. Matrix<char>& precomp_data=*setup_data.precomp_data;
  1241. std::vector<Mat_Type>& interac_type_lst=setup_data.interac_type;
  1242. for(size_t type_indx=0; type_indx<interac_type_lst.size(); type_indx++){
  1243. Mat_Type& interac_type=interac_type_lst[type_indx];
  1244. this->PrecompAll(interac_type, level); // Compute matrices.
  1245. precomp_offset=this->mat->CompactData(level, interac_type, precomp_data, precomp_offset);
  1246. }
  1247. }
  1248. Profile::Toc();
  1249. if(device){ // Host2Device
  1250. Profile::Tic("Host2Device",&this->comm,false,25);
  1251. setup_data.precomp_data->AllocDevice(true);
  1252. Profile::Toc();
  1253. }
  1254. }
  1255. template <class FMMNode>
  1256. void FMM_Pts<FMMNode>::SetupInterac(SetupData<Real_t>& setup_data, bool device){
  1257. int level=setup_data.level;
  1258. std::vector<Mat_Type>& interac_type_lst=setup_data.interac_type;
  1259. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  1260. std::vector<void*>& nodes_out=setup_data.nodes_out;
  1261. Matrix<Real_t>& input_data=*setup_data. input_data;
  1262. Matrix<Real_t>& output_data=*setup_data.output_data;
  1263. std::vector<Vector<Real_t>*>& input_vector=setup_data. input_vector;
  1264. std::vector<Vector<Real_t>*>& output_vector=setup_data.output_vector;
  1265. size_t n_in =nodes_in .size();
  1266. size_t n_out=nodes_out.size();
  1267. // Setup precomputed data.
  1268. if(setup_data.precomp_data->Dim(0)*setup_data.precomp_data->Dim(1)==0) SetupPrecomp(setup_data,device);
  1269. // Build interac_data
  1270. Profile::Tic("Interac-Data",&this->comm,true,25);
  1271. Matrix<char>& interac_data=setup_data.interac_data;
  1272. { // Build precomp_data, interac_data
  1273. std::vector<size_t> interac_mat;
  1274. std::vector<size_t> interac_cnt;
  1275. std::vector<size_t> interac_blk;
  1276. std::vector<size_t> input_perm;
  1277. std::vector<size_t> output_perm;
  1278. size_t dof=0, M_dim0=0, M_dim1=0;
  1279. size_t precomp_offset=0;
  1280. size_t buff_size=DEVICE_BUFFER_SIZE*1024l*1024l;
  1281. if(n_out && n_in) for(size_t type_indx=0; type_indx<interac_type_lst.size(); type_indx++){
  1282. Mat_Type& interac_type=interac_type_lst[type_indx];
  1283. size_t mat_cnt=this->interac_list.ListCount(interac_type);
  1284. Matrix<size_t> precomp_data_offset;
  1285. { // Load precomp_data for interac_type.
  1286. struct HeaderData{
  1287. size_t total_size;
  1288. size_t level;
  1289. size_t mat_cnt ;
  1290. size_t max_depth;
  1291. };
  1292. Matrix<char>& precomp_data=*setup_data.precomp_data;
  1293. char* indx_ptr=precomp_data[0]+precomp_offset;
  1294. HeaderData& header=*(HeaderData*)indx_ptr;indx_ptr+=sizeof(HeaderData);
  1295. precomp_data_offset.ReInit(header.mat_cnt,(1+(2+2)*header.max_depth), (size_t*)indx_ptr, false);
  1296. precomp_offset+=header.total_size;
  1297. }
  1298. Matrix<FMMNode*> src_interac_list(n_in ,mat_cnt); src_interac_list.SetZero();
  1299. Matrix<FMMNode*> trg_interac_list(n_out,mat_cnt); trg_interac_list.SetZero();
  1300. { // Build trg_interac_list
  1301. #pragma omp parallel for
  1302. for(size_t i=0;i<n_out;i++){
  1303. if(!((FMMNode*)nodes_out[i])->IsGhost() && (level==-1 || ((FMMNode*)nodes_out[i])->Depth()==level)){
  1304. Vector<FMMNode*>& lst=((FMMNode*)nodes_out[i])->interac_list[interac_type];
  1305. mem::memcopy(&trg_interac_list[i][0], &lst[0], lst.Dim()*sizeof(FMMNode*));
  1306. assert(lst.Dim()==mat_cnt);
  1307. }
  1308. }
  1309. }
  1310. { // Build src_interac_list
  1311. #pragma omp parallel for
  1312. for(size_t i=0;i<n_out;i++){
  1313. for(size_t j=0;j<mat_cnt;j++)
  1314. if(trg_interac_list[i][j]!=NULL){
  1315. trg_interac_list[i][j]->node_id=n_in;
  1316. }
  1317. }
  1318. #pragma omp parallel for
  1319. for(size_t i=0;i<n_in ;i++) ((FMMNode*)nodes_in [i])->node_id=i;
  1320. #pragma omp parallel for
  1321. for(size_t i=0;i<n_out;i++){
  1322. for(size_t j=0;j<mat_cnt;j++){
  1323. if(trg_interac_list[i][j]!=NULL){
  1324. if(trg_interac_list[i][j]->node_id==n_in){
  1325. trg_interac_list[i][j]=NULL;
  1326. }else{
  1327. src_interac_list[trg_interac_list[i][j]->node_id][j]=(FMMNode*)nodes_out[i];
  1328. }
  1329. }
  1330. }
  1331. }
  1332. }
  1333. Matrix<size_t> interac_dsp(n_out,mat_cnt);
  1334. std::vector<size_t> interac_blk_dsp(1,0);
  1335. { // Determine dof, M_dim0, M_dim1
  1336. dof=1;
  1337. Matrix<Real_t>& M0 = this->interac_list.ClassMat(level, interac_type_lst[0], 0);
  1338. M_dim0=M0.Dim(0); M_dim1=M0.Dim(1);
  1339. }
  1340. { // Determine interaction blocks which fit in memory.
  1341. size_t vec_size=(M_dim0+M_dim1)*sizeof(Real_t)*dof;
  1342. for(size_t j=0;j<mat_cnt;j++){// Determine minimum buff_size
  1343. size_t vec_cnt=0;
  1344. for(size_t i=0;i<n_out;i++){
  1345. if(trg_interac_list[i][j]!=NULL) vec_cnt++;
  1346. }
  1347. if(buff_size<vec_cnt*vec_size)
  1348. buff_size=vec_cnt*vec_size;
  1349. }
  1350. size_t interac_dsp_=0;
  1351. for(size_t j=0;j<mat_cnt;j++){
  1352. for(size_t i=0;i<n_out;i++){
  1353. interac_dsp[i][j]=interac_dsp_;
  1354. if(trg_interac_list[i][j]!=NULL) interac_dsp_++;
  1355. }
  1356. if(interac_dsp_*vec_size>buff_size) // Comment to disable symmetries.
  1357. {
  1358. interac_blk.push_back(j-interac_blk_dsp.back());
  1359. interac_blk_dsp.push_back(j);
  1360. size_t offset=interac_dsp[0][j];
  1361. for(size_t i=0;i<n_out;i++) interac_dsp[i][j]-=offset;
  1362. interac_dsp_-=offset;
  1363. assert(interac_dsp_*vec_size<=buff_size); // Problem too big for buff_size.
  1364. }
  1365. interac_mat.push_back(precomp_data_offset[this->interac_list.InteracClass(interac_type,j)][0]);
  1366. interac_cnt.push_back(interac_dsp_-interac_dsp[0][j]);
  1367. }
  1368. interac_blk.push_back(mat_cnt-interac_blk_dsp.back());
  1369. interac_blk_dsp.push_back(mat_cnt);
  1370. }
  1371. { // Determine input_perm.
  1372. size_t vec_size=M_dim0*dof;
  1373. for(size_t i=0;i<n_out;i++) ((FMMNode*)nodes_out[i])->node_id=i;
  1374. for(size_t k=1;k<interac_blk_dsp.size();k++){
  1375. for(size_t i=0;i<n_in ;i++){
  1376. for(size_t j=interac_blk_dsp[k-1];j<interac_blk_dsp[k];j++){
  1377. FMMNode_t* trg_node=src_interac_list[i][j];
  1378. if(trg_node!=NULL && trg_node->node_id<n_out){
  1379. size_t depth=(this->ScaleInvar()?trg_node->Depth():0);
  1380. input_perm .push_back(precomp_data_offset[j][1+4*depth+0]); // prem
  1381. input_perm .push_back(precomp_data_offset[j][1+4*depth+1]); // scal
  1382. input_perm .push_back(interac_dsp[trg_node->node_id][j]*vec_size*sizeof(Real_t)); // trg_ptr
  1383. input_perm .push_back((size_t)(& input_vector[i][0][0]- input_data[0])); // src_ptr
  1384. assert(input_vector[i]->Dim()==vec_size);
  1385. }
  1386. }
  1387. }
  1388. }
  1389. }
  1390. { // Determine output_perm
  1391. size_t vec_size=M_dim1*dof;
  1392. for(size_t k=1;k<interac_blk_dsp.size();k++){
  1393. for(size_t i=0;i<n_out;i++){
  1394. for(size_t j=interac_blk_dsp[k-1];j<interac_blk_dsp[k];j++){
  1395. if(trg_interac_list[i][j]!=NULL){
  1396. size_t depth=(this->ScaleInvar()?((FMMNode*)nodes_out[i])->Depth():0);
  1397. output_perm.push_back(precomp_data_offset[j][1+4*depth+2]); // prem
  1398. output_perm.push_back(precomp_data_offset[j][1+4*depth+3]); // scal
  1399. output_perm.push_back(interac_dsp[ i ][j]*vec_size*sizeof(Real_t)); // src_ptr
  1400. output_perm.push_back((size_t)(&output_vector[i][0][0]-output_data[0])); // trg_ptr
  1401. assert(output_vector[i]->Dim()==vec_size);
  1402. }
  1403. }
  1404. }
  1405. }
  1406. }
  1407. }
  1408. if(this->dev_buffer.Dim()<buff_size) this->dev_buffer.ReInit(buff_size);
  1409. { // Set interac_data.
  1410. size_t data_size=sizeof(size_t)*4;
  1411. data_size+=sizeof(size_t)+interac_blk.size()*sizeof(size_t);
  1412. data_size+=sizeof(size_t)+interac_cnt.size()*sizeof(size_t);
  1413. data_size+=sizeof(size_t)+interac_mat.size()*sizeof(size_t);
  1414. data_size+=sizeof(size_t)+ input_perm.size()*sizeof(size_t);
  1415. data_size+=sizeof(size_t)+output_perm.size()*sizeof(size_t);
  1416. if(interac_data.Dim(0)*interac_data.Dim(1)<sizeof(size_t)){
  1417. data_size+=sizeof(size_t);
  1418. interac_data.ReInit(1,data_size);
  1419. ((size_t*)&interac_data[0][0])[0]=sizeof(size_t);
  1420. }else{
  1421. size_t pts_data_size=*((size_t*)&interac_data[0][0]);
  1422. assert(interac_data.Dim(0)*interac_data.Dim(1)>=pts_data_size);
  1423. data_size+=pts_data_size;
  1424. if(data_size>interac_data.Dim(0)*interac_data.Dim(1)){ //Resize and copy interac_data.
  1425. Matrix< char> pts_interac_data=interac_data;
  1426. interac_data.ReInit(1,data_size);
  1427. mem::memcopy(&interac_data[0][0],&pts_interac_data[0][0],pts_data_size);
  1428. }
  1429. }
  1430. char* data_ptr=&interac_data[0][0];
  1431. data_ptr+=((size_t*)data_ptr)[0];
  1432. ((size_t*)data_ptr)[0]=data_size; data_ptr+=sizeof(size_t);
  1433. ((size_t*)data_ptr)[0]= M_dim0; data_ptr+=sizeof(size_t);
  1434. ((size_t*)data_ptr)[0]= M_dim1; data_ptr+=sizeof(size_t);
  1435. ((size_t*)data_ptr)[0]= dof; data_ptr+=sizeof(size_t);
  1436. ((size_t*)data_ptr)[0]=interac_blk.size(); data_ptr+=sizeof(size_t);
  1437. mem::memcopy(data_ptr, &interac_blk[0], interac_blk.size()*sizeof(size_t));
  1438. data_ptr+=interac_blk.size()*sizeof(size_t);
  1439. ((size_t*)data_ptr)[0]=interac_cnt.size(); data_ptr+=sizeof(size_t);
  1440. mem::memcopy(data_ptr, &interac_cnt[0], interac_cnt.size()*sizeof(size_t));
  1441. data_ptr+=interac_cnt.size()*sizeof(size_t);
  1442. ((size_t*)data_ptr)[0]=interac_mat.size(); data_ptr+=sizeof(size_t);
  1443. mem::memcopy(data_ptr, &interac_mat[0], interac_mat.size()*sizeof(size_t));
  1444. data_ptr+=interac_mat.size()*sizeof(size_t);
  1445. ((size_t*)data_ptr)[0]= input_perm.size(); data_ptr+=sizeof(size_t);
  1446. mem::memcopy(data_ptr, & input_perm[0], input_perm.size()*sizeof(size_t));
  1447. data_ptr+= input_perm.size()*sizeof(size_t);
  1448. ((size_t*)data_ptr)[0]=output_perm.size(); data_ptr+=sizeof(size_t);
  1449. mem::memcopy(data_ptr, &output_perm[0], output_perm.size()*sizeof(size_t));
  1450. data_ptr+=output_perm.size()*sizeof(size_t);
  1451. }
  1452. }
  1453. Profile::Toc();
  1454. if(device){ // Host2Device
  1455. Profile::Tic("Host2Device",&this->comm,false,25);
  1456. setup_data.interac_data .AllocDevice(true);
  1457. if(staging_buffer.Dim()<sizeof(Real_t)*output_data.Dim(0)*output_data.Dim(1)){
  1458. staging_buffer.ReInit(sizeof(Real_t)*output_data.Dim(0)*output_data.Dim(1));
  1459. staging_buffer.SetZero();
  1460. staging_buffer.AllocDevice(true);
  1461. }
  1462. Profile::Toc();
  1463. }
  1464. }
  1465. #if defined(PVFMM_HAVE_CUDA)
  1466. #include <fmm_pts_gpu.hpp>
  1467. template <class Real_t, int SYNC>
  1468. void EvalListGPU(SetupData<Real_t>& setup_data, Vector<char>& dev_buffer, MPI_Comm& comm) {
  1469. cudaStream_t* stream = pvfmm::CUDA_Lock::acquire_stream();
  1470. Profile::Tic("Host2Device",&comm,false,25);
  1471. typename Matrix<char>::Device interac_data;
  1472. typename Vector<char>::Device buff;
  1473. typename Matrix<char>::Device precomp_data_d;
  1474. typename Matrix<char>::Device interac_data_d;
  1475. typename Matrix<Real_t>::Device input_data_d;
  1476. typename Matrix<Real_t>::Device output_data_d;
  1477. interac_data = setup_data.interac_data;
  1478. buff = dev_buffer. AllocDevice(false);
  1479. precomp_data_d= setup_data.precomp_data->AllocDevice(false);
  1480. interac_data_d= setup_data.interac_data. AllocDevice(false);
  1481. input_data_d = setup_data. input_data->AllocDevice(false);
  1482. output_data_d = setup_data. output_data->AllocDevice(false);
  1483. Profile::Toc();
  1484. Profile::Tic("DeviceComp",&comm,false,20);
  1485. { // Offloaded computation.
  1486. size_t data_size, M_dim0, M_dim1, dof;
  1487. Vector<size_t> interac_blk;
  1488. Vector<size_t> interac_cnt;
  1489. Vector<size_t> interac_mat;
  1490. Vector<size_t> input_perm_d;
  1491. Vector<size_t> output_perm_d;
  1492. { // Set interac_data.
  1493. char* data_ptr=&interac_data [0][0];
  1494. char* dev_ptr=&interac_data_d[0][0];
  1495. data_size=((size_t*)data_ptr)[0]; data_ptr+=data_size; dev_ptr += data_size;
  1496. data_size=((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t); dev_ptr += sizeof(size_t);
  1497. M_dim0 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t); dev_ptr += sizeof(size_t);
  1498. M_dim1 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t); dev_ptr += sizeof(size_t);
  1499. dof =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t); dev_ptr += sizeof(size_t);
  1500. interac_blk.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1501. data_ptr += sizeof(size_t) + sizeof(size_t)*interac_blk.Dim();
  1502. dev_ptr += sizeof(size_t) + sizeof(size_t)*interac_blk.Dim();
  1503. interac_cnt.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1504. data_ptr += sizeof(size_t) + sizeof(size_t)*interac_cnt.Dim();
  1505. dev_ptr += sizeof(size_t) + sizeof(size_t)*interac_cnt.Dim();
  1506. interac_mat.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1507. data_ptr += sizeof(size_t) + sizeof(size_t)*interac_mat.Dim();
  1508. dev_ptr += sizeof(size_t) + sizeof(size_t)*interac_mat.Dim();
  1509. input_perm_d.ReInit(((size_t*)data_ptr)[0],(size_t*)(dev_ptr+sizeof(size_t)),false);
  1510. data_ptr += sizeof(size_t) + sizeof(size_t)*input_perm_d.Dim();
  1511. dev_ptr += sizeof(size_t) + sizeof(size_t)*input_perm_d.Dim();
  1512. output_perm_d.ReInit(((size_t*)data_ptr)[0],(size_t*)(dev_ptr+sizeof(size_t)),false);
  1513. data_ptr += sizeof(size_t) + sizeof(size_t)*output_perm_d.Dim();
  1514. dev_ptr += sizeof(size_t) + sizeof(size_t)*output_perm_d.Dim();
  1515. }
  1516. { // interactions
  1517. size_t interac_indx = 0;
  1518. size_t interac_blk_dsp = 0;
  1519. cudaError_t error;
  1520. for (size_t k = 0; k < interac_blk.Dim(); k++) {
  1521. size_t vec_cnt=0;
  1522. for(size_t j=interac_blk_dsp;j<interac_blk_dsp+interac_blk[k];j++) vec_cnt+=interac_cnt[j];
  1523. if(vec_cnt==0){
  1524. //interac_indx += vec_cnt;
  1525. interac_blk_dsp += interac_blk[k];
  1526. continue;
  1527. }
  1528. char *buff_in_d =&buff[0];
  1529. char *buff_out_d =&buff[vec_cnt*dof*M_dim0*sizeof(Real_t)];
  1530. { // Input permutation.
  1531. in_perm_gpu<Real_t>(&precomp_data_d[0][0], &input_data_d[0][0], buff_in_d,
  1532. &input_perm_d[interac_indx*4], vec_cnt, M_dim0, stream);
  1533. }
  1534. size_t vec_cnt0 = 0;
  1535. for (size_t j = interac_blk_dsp; j < interac_blk_dsp + interac_blk[k];) {
  1536. size_t vec_cnt1 = 0;
  1537. size_t interac_mat0 = interac_mat[j];
  1538. for (; j < interac_blk_dsp + interac_blk[k] && interac_mat[j] == interac_mat0; j++) vec_cnt1 += interac_cnt[j];
  1539. Matrix<Real_t> M_d(M_dim0, M_dim1, (Real_t*)(precomp_data_d.dev_ptr + interac_mat0), false);
  1540. Matrix<Real_t> Ms_d(dof*vec_cnt1, M_dim0, (Real_t*)(buff_in_d + M_dim0*vec_cnt0*dof*sizeof(Real_t)), false);
  1541. Matrix<Real_t> Mt_d(dof*vec_cnt1, M_dim1, (Real_t*)(buff_out_d + M_dim1*vec_cnt0*dof*sizeof(Real_t)), false);
  1542. Matrix<Real_t>::CUBLASGEMM(Mt_d, Ms_d, M_d);
  1543. vec_cnt0 += vec_cnt1;
  1544. }
  1545. { // Output permutation.
  1546. out_perm_gpu<Real_t>(&precomp_data_d[0][0], &output_data_d[0][0], buff_out_d,
  1547. &output_perm_d[interac_indx*4], vec_cnt, M_dim1, stream);
  1548. }
  1549. interac_indx += vec_cnt;
  1550. interac_blk_dsp += interac_blk[k];
  1551. }
  1552. }
  1553. }
  1554. Profile::Toc();
  1555. if(SYNC) CUDA_Lock::wait();
  1556. }
  1557. #endif
  1558. template <class FMMNode>
  1559. template <int SYNC>
  1560. void FMM_Pts<FMMNode>::EvalList(SetupData<Real_t>& setup_data, bool device){
  1561. if(setup_data.interac_data.Dim(0)==0 || setup_data.interac_data.Dim(1)==0){
  1562. Profile::Tic("Host2Device",&this->comm,false,25);
  1563. Profile::Toc();
  1564. Profile::Tic("DeviceComp",&this->comm,false,20);
  1565. Profile::Toc();
  1566. return;
  1567. }
  1568. #if defined(PVFMM_HAVE_CUDA)
  1569. if (device) {
  1570. EvalListGPU<Real_t, SYNC>(setup_data, this->dev_buffer, this->comm);
  1571. return;
  1572. }
  1573. #endif
  1574. Profile::Tic("Host2Device",&this->comm,false,25);
  1575. typename Vector<char>::Device buff;
  1576. typename Matrix<char>::Device precomp_data;
  1577. typename Matrix<char>::Device interac_data;
  1578. typename Matrix<Real_t>::Device input_data;
  1579. typename Matrix<Real_t>::Device output_data;
  1580. if(device){
  1581. buff = this-> dev_buffer. AllocDevice(false);
  1582. precomp_data= setup_data.precomp_data->AllocDevice(false);
  1583. interac_data= setup_data.interac_data. AllocDevice(false);
  1584. input_data = setup_data. input_data->AllocDevice(false);
  1585. output_data = setup_data. output_data->AllocDevice(false);
  1586. }else{
  1587. buff = this-> dev_buffer;
  1588. precomp_data=*setup_data.precomp_data;
  1589. interac_data= setup_data.interac_data;
  1590. input_data =*setup_data. input_data;
  1591. output_data =*setup_data. output_data;
  1592. }
  1593. Profile::Toc();
  1594. Profile::Tic("DeviceComp",&this->comm,false,20);
  1595. int lock_idx=-1;
  1596. int wait_lock_idx=-1;
  1597. if(device) wait_lock_idx=MIC_Lock::curr_lock();
  1598. if(device) lock_idx=MIC_Lock::get_lock();
  1599. #ifdef __INTEL_OFFLOAD
  1600. #pragma offload if(device) target(mic:0) signal(&MIC_Lock::lock_vec[device?lock_idx:0])
  1601. #endif
  1602. { // Offloaded computation.
  1603. // Set interac_data.
  1604. size_t data_size, M_dim0, M_dim1, dof;
  1605. Vector<size_t> interac_blk;
  1606. Vector<size_t> interac_cnt;
  1607. Vector<size_t> interac_mat;
  1608. Vector<size_t> input_perm;
  1609. Vector<size_t> output_perm;
  1610. { // Set interac_data.
  1611. char* data_ptr=&interac_data[0][0];
  1612. data_size=((size_t*)data_ptr)[0]; data_ptr+=data_size;
  1613. data_size=((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  1614. M_dim0 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  1615. M_dim1 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  1616. dof =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  1617. interac_blk.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1618. data_ptr+=sizeof(size_t)+interac_blk.Dim()*sizeof(size_t);
  1619. interac_cnt.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1620. data_ptr+=sizeof(size_t)+interac_cnt.Dim()*sizeof(size_t);
  1621. interac_mat.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1622. data_ptr+=sizeof(size_t)+interac_mat.Dim()*sizeof(size_t);
  1623. input_perm .ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1624. data_ptr+=sizeof(size_t)+ input_perm.Dim()*sizeof(size_t);
  1625. output_perm.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  1626. data_ptr+=sizeof(size_t)+output_perm.Dim()*sizeof(size_t);
  1627. }
  1628. if(device) MIC_Lock::wait_lock(wait_lock_idx);
  1629. //Compute interaction from Chebyshev source density.
  1630. { // interactions
  1631. int omp_p=omp_get_max_threads();
  1632. size_t interac_indx=0;
  1633. size_t interac_blk_dsp=0;
  1634. for(size_t k=0;k<interac_blk.Dim();k++){
  1635. size_t vec_cnt=0;
  1636. for(size_t j=interac_blk_dsp;j<interac_blk_dsp+interac_blk[k];j++) vec_cnt+=interac_cnt[j];
  1637. if(vec_cnt==0){
  1638. //interac_indx += vec_cnt;
  1639. interac_blk_dsp += interac_blk[k];
  1640. continue;
  1641. }
  1642. char* buff_in =&buff[0];
  1643. char* buff_out=&buff[vec_cnt*dof*M_dim0*sizeof(Real_t)];
  1644. // Input permutation.
  1645. #pragma omp parallel for
  1646. for(int tid=0;tid<omp_p;tid++){
  1647. size_t a=( tid *vec_cnt)/omp_p;
  1648. size_t b=((tid+1)*vec_cnt)/omp_p;
  1649. for(size_t i=a;i<b;i++){
  1650. const PERM_INT_T* perm=(PERM_INT_T*)(precomp_data[0]+input_perm[(interac_indx+i)*4+0]);
  1651. const Real_t* scal=( Real_t*)(precomp_data[0]+input_perm[(interac_indx+i)*4+1]);
  1652. const Real_t* v_in =( Real_t*)( input_data[0]+input_perm[(interac_indx+i)*4+3]);
  1653. Real_t* v_out=( Real_t*)( buff_in +input_perm[(interac_indx+i)*4+2]);
  1654. // TODO: Fix for dof>1
  1655. #ifdef __MIC__
  1656. {
  1657. __m512d v8;
  1658. size_t j_start=(((uintptr_t)(v_out ) + (uintptr_t)(MEM_ALIGN-1)) & ~ (uintptr_t)(MEM_ALIGN-1))-((uintptr_t)v_out);
  1659. size_t j_end =(((uintptr_t)(v_out+M_dim0) ) & ~ (uintptr_t)(MEM_ALIGN-1))-((uintptr_t)v_out);
  1660. j_start/=sizeof(Real_t);
  1661. j_end /=sizeof(Real_t);
  1662. assert(((uintptr_t)(v_out))%sizeof(Real_t)==0);
  1663. assert(((uintptr_t)(v_out+j_start))%64==0);
  1664. assert(((uintptr_t)(v_out+j_end ))%64==0);
  1665. size_t j=0;
  1666. for(;j<j_start;j++ ){
  1667. v_out[j]=v_in[perm[j]]*scal[j];
  1668. }
  1669. for(;j<j_end ;j+=8){
  1670. v8=_mm512_setr_pd(
  1671. v_in[perm[j+0]]*scal[j+0],
  1672. v_in[perm[j+1]]*scal[j+1],
  1673. v_in[perm[j+2]]*scal[j+2],
  1674. v_in[perm[j+3]]*scal[j+3],
  1675. v_in[perm[j+4]]*scal[j+4],
  1676. v_in[perm[j+5]]*scal[j+5],
  1677. v_in[perm[j+6]]*scal[j+6],
  1678. v_in[perm[j+7]]*scal[j+7]);
  1679. _mm512_storenrngo_pd(v_out+j,v8);
  1680. }
  1681. for(;j<M_dim0 ;j++ ){
  1682. v_out[j]=v_in[perm[j]]*scal[j];
  1683. }
  1684. }
  1685. #else
  1686. for(size_t j=0;j<M_dim0;j++ ){
  1687. v_out[j]=v_in[perm[j]]*scal[j];
  1688. }
  1689. #endif
  1690. }
  1691. }
  1692. size_t vec_cnt0=0;
  1693. for(size_t j=interac_blk_dsp;j<interac_blk_dsp+interac_blk[k];){
  1694. size_t vec_cnt1=0;
  1695. size_t interac_mat0=interac_mat[j];
  1696. for(;j<interac_blk_dsp+interac_blk[k] && interac_mat[j]==interac_mat0;j++) vec_cnt1+=interac_cnt[j];
  1697. Matrix<Real_t> M(M_dim0, M_dim1, (Real_t*)(precomp_data[0]+interac_mat0), false);
  1698. #ifdef __MIC__
  1699. {
  1700. Matrix<Real_t> Ms(dof*vec_cnt1, M_dim0, (Real_t*)(buff_in +M_dim0*vec_cnt0*dof*sizeof(Real_t)), false);
  1701. Matrix<Real_t> Mt(dof*vec_cnt1, M_dim1, (Real_t*)(buff_out+M_dim1*vec_cnt0*dof*sizeof(Real_t)), false);
  1702. Matrix<Real_t>::GEMM(Mt,Ms,M);
  1703. }
  1704. #else
  1705. #pragma omp parallel for
  1706. for(int tid=0;tid<omp_p;tid++){
  1707. size_t a=(dof*vec_cnt1*(tid ))/omp_p;
  1708. size_t b=(dof*vec_cnt1*(tid+1))/omp_p;
  1709. Matrix<Real_t> Ms(b-a, M_dim0, (Real_t*)(buff_in +M_dim0*vec_cnt0*dof*sizeof(Real_t))+M_dim0*a, false);
  1710. Matrix<Real_t> Mt(b-a, M_dim1, (Real_t*)(buff_out+M_dim1*vec_cnt0*dof*sizeof(Real_t))+M_dim1*a, false);
  1711. Matrix<Real_t>::GEMM(Mt,Ms,M);
  1712. }
  1713. #endif
  1714. vec_cnt0+=vec_cnt1;
  1715. }
  1716. // Output permutation.
  1717. #pragma omp parallel for
  1718. for(int tid=0;tid<omp_p;tid++){
  1719. size_t a=( tid *vec_cnt)/omp_p;
  1720. size_t b=((tid+1)*vec_cnt)/omp_p;
  1721. if(tid> 0 && a<vec_cnt){ // Find 'a' independent of other threads.
  1722. size_t out_ptr=output_perm[(interac_indx+a)*4+3];
  1723. if(tid> 0) while(a<vec_cnt && out_ptr==output_perm[(interac_indx+a)*4+3]) a++;
  1724. }
  1725. if(tid<omp_p-1 && b<vec_cnt){ // Find 'b' independent of other threads.
  1726. size_t out_ptr=output_perm[(interac_indx+b)*4+3];
  1727. if(tid<omp_p-1) while(b<vec_cnt && out_ptr==output_perm[(interac_indx+b)*4+3]) b++;
  1728. }
  1729. for(size_t i=a;i<b;i++){ // Compute permutations.
  1730. const PERM_INT_T* perm=(PERM_INT_T*)(precomp_data[0]+output_perm[(interac_indx+i)*4+0]);
  1731. const Real_t* scal=( Real_t*)(precomp_data[0]+output_perm[(interac_indx+i)*4+1]);
  1732. const Real_t* v_in =( Real_t*)( buff_out +output_perm[(interac_indx+i)*4+2]);
  1733. Real_t* v_out=( Real_t*)( output_data[0]+output_perm[(interac_indx+i)*4+3]);
  1734. // TODO: Fix for dof>1
  1735. #ifdef __MIC__
  1736. {
  1737. __m512d v8;
  1738. __m512d v_old;
  1739. size_t j_start=(((uintptr_t)(v_out ) + (uintptr_t)(MEM_ALIGN-1)) & ~ (uintptr_t)(MEM_ALIGN-1))-((uintptr_t)v_out);
  1740. size_t j_end =(((uintptr_t)(v_out+M_dim1) ) & ~ (uintptr_t)(MEM_ALIGN-1))-((uintptr_t)v_out);
  1741. j_start/=sizeof(Real_t);
  1742. j_end /=sizeof(Real_t);
  1743. assert(((uintptr_t)(v_out))%sizeof(Real_t)==0);
  1744. assert(((uintptr_t)(v_out+j_start))%64==0);
  1745. assert(((uintptr_t)(v_out+j_end ))%64==0);
  1746. size_t j=0;
  1747. for(;j<j_start;j++ ){
  1748. v_out[j]+=v_in[perm[j]]*scal[j];
  1749. }
  1750. for(;j<j_end ;j+=8){
  1751. v_old=_mm512_load_pd(v_out+j);
  1752. v8=_mm512_setr_pd(
  1753. v_in[perm[j+0]]*scal[j+0],
  1754. v_in[perm[j+1]]*scal[j+1],
  1755. v_in[perm[j+2]]*scal[j+2],
  1756. v_in[perm[j+3]]*scal[j+3],
  1757. v_in[perm[j+4]]*scal[j+4],
  1758. v_in[perm[j+5]]*scal[j+5],
  1759. v_in[perm[j+6]]*scal[j+6],
  1760. v_in[perm[j+7]]*scal[j+7]);
  1761. v_old=_mm512_add_pd(v_old, v8);
  1762. _mm512_storenrngo_pd(v_out+j,v_old);
  1763. }
  1764. for(;j<M_dim1 ;j++ ){
  1765. v_out[j]+=v_in[perm[j]]*scal[j];
  1766. }
  1767. }
  1768. #else
  1769. for(size_t j=0;j<M_dim1;j++ ){
  1770. v_out[j]+=v_in[perm[j]]*scal[j];
  1771. }
  1772. #endif
  1773. }
  1774. }
  1775. interac_indx+=vec_cnt;
  1776. interac_blk_dsp+=interac_blk[k];
  1777. }
  1778. }
  1779. if(device) MIC_Lock::release_lock(lock_idx);
  1780. }
  1781. #ifdef __INTEL_OFFLOAD
  1782. if(SYNC){
  1783. #pragma offload if(device) target(mic:0)
  1784. {if(device) MIC_Lock::wait_lock(lock_idx);}
  1785. }
  1786. #endif
  1787. Profile::Toc();
  1788. }
  1789. template <class FMMNode>
  1790. void FMM_Pts<FMMNode>::Source2UpSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  1791. if(!this->MultipoleOrder()) return;
  1792. { // Set setup_data
  1793. setup_data. level=level;
  1794. setup_data.kernel=kernel->k_s2m;
  1795. setup_data. input_data=&buff[4];
  1796. setup_data.output_data=&buff[0];
  1797. setup_data. coord_data=&buff[6];
  1798. Vector<FMMNode_t*>& nodes_in =n_list[4];
  1799. Vector<FMMNode_t*>& nodes_out=n_list[0];
  1800. setup_data.nodes_in .clear();
  1801. setup_data.nodes_out.clear();
  1802. for(size_t i=0;i<nodes_in .Dim();i++) if((nodes_in [i]->Depth()==level || level==-1) && (nodes_in [i]->src_coord.Dim() || nodes_in [i]->surf_coord.Dim()) && nodes_in [i]->IsLeaf() && !nodes_in [i]->IsGhost()) setup_data.nodes_in .push_back(nodes_in [i]);
  1803. for(size_t i=0;i<nodes_out.Dim();i++) if((nodes_out[i]->Depth()==level || level==-1) && (nodes_out[i]->src_coord.Dim() || nodes_out[i]->surf_coord.Dim()) && nodes_out[i]->IsLeaf() && !nodes_out[i]->IsGhost()) setup_data.nodes_out.push_back(nodes_out[i]);
  1804. }
  1805. struct PackedData{
  1806. size_t len;
  1807. Matrix<Real_t>* ptr;
  1808. Vector<size_t> cnt;
  1809. Vector<size_t> dsp;
  1810. };
  1811. struct InteracData{
  1812. Vector<size_t> in_node;
  1813. Vector<size_t> scal_idx;
  1814. Vector<Real_t> coord_shift;
  1815. Vector<size_t> interac_cnt;
  1816. Vector<size_t> interac_dsp;
  1817. Vector<size_t> interac_cst;
  1818. Vector<Real_t> scal[4*MAX_DEPTH];
  1819. Matrix<Real_t> M[4];
  1820. };
  1821. struct ptSetupData{
  1822. int level;
  1823. const Kernel<Real_t>* kernel;
  1824. PackedData src_coord; // Src coord
  1825. PackedData src_value; // Src density
  1826. PackedData srf_coord; // Srf coord
  1827. PackedData srf_value; // Srf density
  1828. PackedData trg_coord; // Trg coord
  1829. PackedData trg_value; // Trg potential
  1830. InteracData interac_data;
  1831. };
  1832. ptSetupData data;
  1833. data. level=setup_data. level;
  1834. data.kernel=setup_data.kernel;
  1835. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  1836. std::vector<void*>& nodes_out=setup_data.nodes_out;
  1837. { // Set src data
  1838. std::vector<void*>& nodes=nodes_in;
  1839. PackedData& coord=data.src_coord;
  1840. PackedData& value=data.src_value;
  1841. coord.ptr=setup_data. coord_data;
  1842. value.ptr=setup_data. input_data;
  1843. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  1844. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  1845. coord.cnt.ReInit(nodes.size());
  1846. coord.dsp.ReInit(nodes.size());
  1847. value.cnt.ReInit(nodes.size());
  1848. value.dsp.ReInit(nodes.size());
  1849. #pragma omp parallel for
  1850. for(size_t i=0;i<nodes.size();i++){
  1851. ((FMMNode_t*)nodes[i])->node_id=i;
  1852. Vector<Real_t>& coord_vec=((FMMNode*)nodes[i])->src_coord;
  1853. Vector<Real_t>& value_vec=((FMMNode*)nodes[i])->src_value;
  1854. if(coord_vec.Dim()){
  1855. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  1856. assert(coord.dsp[i]<coord.len);
  1857. coord.cnt[i]=coord_vec.Dim();
  1858. }else{
  1859. coord.dsp[i]=0;
  1860. coord.cnt[i]=0;
  1861. }
  1862. if(value_vec.Dim()){
  1863. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  1864. assert(value.dsp[i]<value.len);
  1865. value.cnt[i]=value_vec.Dim();
  1866. }else{
  1867. value.dsp[i]=0;
  1868. value.cnt[i]=0;
  1869. }
  1870. }
  1871. }
  1872. { // Set srf data
  1873. std::vector<void*>& nodes=nodes_in;
  1874. PackedData& coord=data.srf_coord;
  1875. PackedData& value=data.srf_value;
  1876. coord.ptr=setup_data. coord_data;
  1877. value.ptr=setup_data. input_data;
  1878. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  1879. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  1880. coord.cnt.ReInit(nodes.size());
  1881. coord.dsp.ReInit(nodes.size());
  1882. value.cnt.ReInit(nodes.size());
  1883. value.dsp.ReInit(nodes.size());
  1884. #pragma omp parallel for
  1885. for(size_t i=0;i<nodes.size();i++){
  1886. Vector<Real_t>& coord_vec=((FMMNode*)nodes[i])->surf_coord;
  1887. Vector<Real_t>& value_vec=((FMMNode*)nodes[i])->surf_value;
  1888. if(coord_vec.Dim()){
  1889. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  1890. assert(coord.dsp[i]<coord.len);
  1891. coord.cnt[i]=coord_vec.Dim();
  1892. }else{
  1893. coord.dsp[i]=0;
  1894. coord.cnt[i]=0;
  1895. }
  1896. if(value_vec.Dim()){
  1897. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  1898. assert(value.dsp[i]<value.len);
  1899. value.cnt[i]=value_vec.Dim();
  1900. }else{
  1901. value.dsp[i]=0;
  1902. value.cnt[i]=0;
  1903. }
  1904. }
  1905. }
  1906. { // Set trg data
  1907. std::vector<void*>& nodes=nodes_out;
  1908. PackedData& coord=data.trg_coord;
  1909. PackedData& value=data.trg_value;
  1910. coord.ptr=setup_data. coord_data;
  1911. value.ptr=setup_data.output_data;
  1912. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  1913. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  1914. coord.cnt.ReInit(nodes.size());
  1915. coord.dsp.ReInit(nodes.size());
  1916. value.cnt.ReInit(nodes.size());
  1917. value.dsp.ReInit(nodes.size());
  1918. #pragma omp parallel for
  1919. for(size_t i=0;i<nodes.size();i++){
  1920. Vector<Real_t>& coord_vec=tree->upwd_check_surf[((FMMNode*)nodes[i])->Depth()];
  1921. Vector<Real_t>& value_vec=((FMMData*)((FMMNode*)nodes[i])->FMMData())->upward_equiv;
  1922. if(coord_vec.Dim()){
  1923. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  1924. assert(coord.dsp[i]<coord.len);
  1925. coord.cnt[i]=coord_vec.Dim();
  1926. }else{
  1927. coord.dsp[i]=0;
  1928. coord.cnt[i]=0;
  1929. }
  1930. if(value_vec.Dim()){
  1931. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  1932. assert(value.dsp[i]<value.len);
  1933. value.cnt[i]=value_vec.Dim();
  1934. }else{
  1935. value.dsp[i]=0;
  1936. value.cnt[i]=0;
  1937. }
  1938. }
  1939. }
  1940. { // Set interac_data
  1941. int omp_p=omp_get_max_threads();
  1942. std::vector<std::vector<size_t> > in_node_(omp_p);
  1943. std::vector<std::vector<size_t> > scal_idx_(omp_p);
  1944. std::vector<std::vector<Real_t> > coord_shift_(omp_p);
  1945. std::vector<std::vector<size_t> > interac_cnt_(omp_p);
  1946. if(this->ScaleInvar()){ // Set scal
  1947. const Kernel<Real_t>* ker=kernel->k_m2m;
  1948. for(size_t l=0;l<MAX_DEPTH;l++){ // scal[l*4+2]
  1949. Vector<Real_t>& scal=data.interac_data.scal[l*4+2];
  1950. Vector<Real_t>& scal_exp=ker->trg_scal;
  1951. scal.ReInit(scal_exp.Dim());
  1952. for(size_t i=0;i<scal.Dim();i++){
  1953. scal[i]=std::pow(2.0,-scal_exp[i]*l);
  1954. }
  1955. }
  1956. for(size_t l=0;l<MAX_DEPTH;l++){ // scal[l*4+3]
  1957. Vector<Real_t>& scal=data.interac_data.scal[l*4+3];
  1958. Vector<Real_t>& scal_exp=ker->src_scal;
  1959. scal.ReInit(scal_exp.Dim());
  1960. for(size_t i=0;i<scal.Dim();i++){
  1961. scal[i]=std::pow(2.0,-scal_exp[i]*l);
  1962. }
  1963. }
  1964. }
  1965. #pragma omp parallel for
  1966. for(size_t tid=0;tid<omp_p;tid++){
  1967. std::vector<size_t>& in_node =in_node_[tid] ;
  1968. std::vector<size_t>& scal_idx =scal_idx_[tid] ;
  1969. std::vector<Real_t>& coord_shift=coord_shift_[tid];
  1970. std::vector<size_t>& interac_cnt=interac_cnt_[tid];
  1971. size_t a=(nodes_out.size()*(tid+0))/omp_p;
  1972. size_t b=(nodes_out.size()*(tid+1))/omp_p;
  1973. for(size_t i=a;i<b;i++){
  1974. FMMNode_t* tnode=(FMMNode_t*)nodes_out[i];
  1975. Real_t s=std::pow(0.5,tnode->Depth());
  1976. size_t interac_cnt_=0;
  1977. { // S2U_Type
  1978. Mat_Type type=S2U_Type;
  1979. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  1980. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  1981. FMMNode_t* snode=intlst[j];
  1982. size_t snode_id=snode->node_id;
  1983. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  1984. in_node.push_back(snode_id);
  1985. scal_idx.push_back(snode->Depth());
  1986. { // set coord_shift
  1987. const int* rel_coord=interac_list.RelativeCoord(type,j);
  1988. const Real_t* scoord=snode->Coord();
  1989. const Real_t* tcoord=tnode->Coord();
  1990. Real_t shift[COORD_DIM];
  1991. shift[0]=rel_coord[0]*0.5*s-(scoord[0]+0.5*s)+(0+0.5*s);
  1992. shift[1]=rel_coord[1]*0.5*s-(scoord[1]+0.5*s)+(0+0.5*s);
  1993. shift[2]=rel_coord[2]*0.5*s-(scoord[2]+0.5*s)+(0+0.5*s);
  1994. coord_shift.push_back(shift[0]);
  1995. coord_shift.push_back(shift[1]);
  1996. coord_shift.push_back(shift[2]);
  1997. }
  1998. interac_cnt_++;
  1999. }
  2000. }
  2001. interac_cnt.push_back(interac_cnt_);
  2002. }
  2003. }
  2004. { // Combine interac data
  2005. InteracData& interac_data=data.interac_data;
  2006. { // in_node
  2007. typedef size_t ElemType;
  2008. std::vector<std::vector<ElemType> >& vec_=in_node_;
  2009. pvfmm::Vector<ElemType>& vec=interac_data.in_node;
  2010. std::vector<size_t> vec_dsp(omp_p+1,0);
  2011. for(size_t tid=0;tid<omp_p;tid++){
  2012. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  2013. }
  2014. vec.ReInit(vec_dsp[omp_p]);
  2015. #pragma omp parallel for
  2016. for(size_t tid=0;tid<omp_p;tid++){
  2017. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  2018. }
  2019. }
  2020. { // scal_idx
  2021. typedef size_t ElemType;
  2022. std::vector<std::vector<ElemType> >& vec_=scal_idx_;
  2023. pvfmm::Vector<ElemType>& vec=interac_data.scal_idx;
  2024. std::vector<size_t> vec_dsp(omp_p+1,0);
  2025. for(size_t tid=0;tid<omp_p;tid++){
  2026. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  2027. }
  2028. vec.ReInit(vec_dsp[omp_p]);
  2029. #pragma omp parallel for
  2030. for(size_t tid=0;tid<omp_p;tid++){
  2031. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  2032. }
  2033. }
  2034. { // coord_shift
  2035. typedef Real_t ElemType;
  2036. std::vector<std::vector<ElemType> >& vec_=coord_shift_;
  2037. pvfmm::Vector<ElemType>& vec=interac_data.coord_shift;
  2038. std::vector<size_t> vec_dsp(omp_p+1,0);
  2039. for(size_t tid=0;tid<omp_p;tid++){
  2040. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  2041. }
  2042. vec.ReInit(vec_dsp[omp_p]);
  2043. #pragma omp parallel for
  2044. for(size_t tid=0;tid<omp_p;tid++){
  2045. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  2046. }
  2047. }
  2048. { // interac_cnt
  2049. typedef size_t ElemType;
  2050. std::vector<std::vector<ElemType> >& vec_=interac_cnt_;
  2051. pvfmm::Vector<ElemType>& vec=interac_data.interac_cnt;
  2052. std::vector<size_t> vec_dsp(omp_p+1,0);
  2053. for(size_t tid=0;tid<omp_p;tid++){
  2054. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  2055. }
  2056. vec.ReInit(vec_dsp[omp_p]);
  2057. #pragma omp parallel for
  2058. for(size_t tid=0;tid<omp_p;tid++){
  2059. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  2060. }
  2061. }
  2062. { // interac_dsp
  2063. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  2064. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  2065. dsp.ReInit(cnt.Dim()); if(dsp.Dim()) dsp[0]=0;
  2066. omp_par::scan(&cnt[0],&dsp[0],dsp.Dim());
  2067. }
  2068. }
  2069. { // Set M[2], M[3]
  2070. InteracData& interac_data=data.interac_data;
  2071. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  2072. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  2073. if(cnt.Dim() && cnt[cnt.Dim()-1]+dsp[dsp.Dim()-1]){
  2074. data.interac_data.M[2]=this->mat->Mat(level, UC2UE0_Type, 0);
  2075. data.interac_data.M[3]=this->mat->Mat(level, UC2UE1_Type, 0);
  2076. }else{
  2077. data.interac_data.M[2].ReInit(0,0);
  2078. data.interac_data.M[3].ReInit(0,0);
  2079. }
  2080. }
  2081. }
  2082. PtSetup(setup_data, &data);
  2083. }
  2084. template <class FMMNode>
  2085. void FMM_Pts<FMMNode>::Source2Up(SetupData<Real_t>& setup_data, bool device){
  2086. if(!this->MultipoleOrder()) return;
  2087. //Add Source2Up contribution.
  2088. this->EvalListPts(setup_data, device);
  2089. }
  2090. template <class FMMNode>
  2091. void FMM_Pts<FMMNode>::Up2UpSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  2092. if(!this->MultipoleOrder()) return;
  2093. { // Set setup_data
  2094. setup_data.level=level;
  2095. setup_data.kernel=kernel->k_m2m;
  2096. setup_data.interac_type.resize(1);
  2097. setup_data.interac_type[0]=U2U_Type;
  2098. setup_data. input_data=&buff[0];
  2099. setup_data.output_data=&buff[0];
  2100. Vector<FMMNode_t*>& nodes_in =n_list[0];
  2101. Vector<FMMNode_t*>& nodes_out=n_list[0];
  2102. setup_data.nodes_in .clear();
  2103. setup_data.nodes_out.clear();
  2104. for(size_t i=0;i<nodes_in .Dim();i++) if((nodes_in [i]->Depth()==level+1) && nodes_in [i]->pt_cnt[0]) setup_data.nodes_in .push_back(nodes_in [i]);
  2105. for(size_t i=0;i<nodes_out.Dim();i++) if((nodes_out[i]->Depth()==level ) && nodes_out[i]->pt_cnt[0]) setup_data.nodes_out.push_back(nodes_out[i]);
  2106. }
  2107. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  2108. std::vector<void*>& nodes_out=setup_data.nodes_out;
  2109. std::vector<Vector<Real_t>*>& input_vector=setup_data. input_vector; input_vector.clear();
  2110. std::vector<Vector<Real_t>*>& output_vector=setup_data.output_vector; output_vector.clear();
  2111. for(size_t i=0;i<nodes_in .size();i++) input_vector.push_back(&((FMMData*)((FMMNode*)nodes_in [i])->FMMData())->upward_equiv);
  2112. for(size_t i=0;i<nodes_out.size();i++) output_vector.push_back(&((FMMData*)((FMMNode*)nodes_out[i])->FMMData())->upward_equiv);
  2113. SetupInterac(setup_data,device);
  2114. }
  2115. template <class FMMNode>
  2116. void FMM_Pts<FMMNode>::Up2Up (SetupData<Real_t>& setup_data, bool device){
  2117. if(!this->MultipoleOrder()) return;
  2118. //Add Up2Up contribution.
  2119. EvalList(setup_data, device);
  2120. }
  2121. template <class FMMNode>
  2122. void FMM_Pts<FMMNode>::PeriodicBC(FMMNode* node){
  2123. if(!this->ScaleInvar() || this->MultipoleOrder()==0) return;
  2124. Matrix<Real_t>& M = Precomp(0, BC_Type, 0);
  2125. assert(node->FMMData()->upward_equiv.Dim()>0);
  2126. int dof=1;
  2127. Vector<Real_t>& upward_equiv=node->FMMData()->upward_equiv;
  2128. Vector<Real_t>& dnward_equiv=node->FMMData()->dnward_equiv;
  2129. assert(upward_equiv.Dim()==M.Dim(0)*dof);
  2130. assert(dnward_equiv.Dim()==M.Dim(1)*dof);
  2131. Matrix<Real_t> d_equiv(dof,M.Dim(0),&dnward_equiv[0],false);
  2132. Matrix<Real_t> u_equiv(dof,M.Dim(1),&upward_equiv[0],false);
  2133. Matrix<Real_t>::GEMM(d_equiv,u_equiv,M);
  2134. }
  2135. template <class FMMNode>
  2136. void FMM_Pts<FMMNode>::FFT_UpEquiv(size_t dof, size_t m, size_t ker_dim0, Vector<size_t>& fft_vec, Vector<Real_t>& fft_scal,
  2137. Vector<Real_t>& input_data, Vector<Real_t>& output_data, Vector<Real_t>& buffer_){
  2138. size_t n1=m*2;
  2139. size_t n2=n1*n1;
  2140. size_t n3=n1*n2;
  2141. size_t n3_=n2*(n1/2+1);
  2142. size_t chld_cnt=1UL<<COORD_DIM;
  2143. size_t fftsize_in =2*n3_*chld_cnt*ker_dim0*dof;
  2144. int omp_p=omp_get_max_threads();
  2145. //Load permutation map.
  2146. size_t n=6*(m-1)*(m-1)+2;
  2147. static Vector<size_t> map;
  2148. { // Build map to reorder upward_equiv
  2149. size_t n_old=map.Dim();
  2150. if(n_old!=n){
  2151. Real_t c[3]={0,0,0};
  2152. Vector<Real_t> surf=surface(m, c, (Real_t)(m-1), 0);
  2153. map.Resize(surf.Dim()/COORD_DIM);
  2154. for(size_t i=0;i<map.Dim();i++)
  2155. map[i]=((size_t)(m-1-surf[i*3]+0.5))+((size_t)(m-1-surf[i*3+1]+0.5))*n1+((size_t)(m-1-surf[i*3+2]+0.5))*n2;
  2156. }
  2157. }
  2158. { // Build FFTW plan.
  2159. if(!vlist_fft_flag){
  2160. int nnn[3]={(int)n1,(int)n1,(int)n1};
  2161. void *fftw_in, *fftw_out;
  2162. fftw_in = mem::aligned_new<Real_t>( n3 *ker_dim0*chld_cnt);
  2163. fftw_out = mem::aligned_new<Real_t>(2*n3_*ker_dim0*chld_cnt);
  2164. vlist_fftplan = FFTW_t<Real_t>::fft_plan_many_dft_r2c(COORD_DIM,nnn,ker_dim0*chld_cnt,
  2165. (Real_t*)fftw_in, NULL, 1, n3, (typename FFTW_t<Real_t>::cplx*)(fftw_out),NULL, 1, n3_);
  2166. mem::aligned_delete<Real_t>((Real_t*)fftw_in );
  2167. mem::aligned_delete<Real_t>((Real_t*)fftw_out);
  2168. vlist_fft_flag=true;
  2169. }
  2170. }
  2171. { // Offload section
  2172. size_t n_in = fft_vec.Dim();
  2173. #pragma omp parallel for
  2174. for(int pid=0; pid<omp_p; pid++){
  2175. size_t node_start=(n_in*(pid ))/omp_p;
  2176. size_t node_end =(n_in*(pid+1))/omp_p;
  2177. Vector<Real_t> buffer(fftsize_in, &buffer_[fftsize_in*pid], false);
  2178. for(size_t node_idx=node_start; node_idx<node_end; node_idx++){
  2179. Matrix<Real_t> upward_equiv(chld_cnt,n*ker_dim0*dof,&input_data[0] + fft_vec[node_idx],false);
  2180. Vector<Real_t> upward_equiv_fft(fftsize_in, &output_data[fftsize_in *node_idx], false);
  2181. upward_equiv_fft.SetZero();
  2182. // Rearrange upward equivalent data.
  2183. for(size_t k=0;k<n;k++){
  2184. size_t idx=map[k];
  2185. for(int j1=0;j1<dof;j1++)
  2186. for(int j0=0;j0<(int)chld_cnt;j0++)
  2187. for(int i=0;i<ker_dim0;i++)
  2188. upward_equiv_fft[idx+(j0+(i+j1*ker_dim0)*chld_cnt)*n3]=upward_equiv[j0][ker_dim0*(n*j1+k)+i]*fft_scal[ker_dim0*node_idx+i];
  2189. }
  2190. // Compute FFT.
  2191. for(int i=0;i<dof;i++)
  2192. FFTW_t<Real_t>::fft_execute_dft_r2c(vlist_fftplan, (Real_t*)&upward_equiv_fft[i* n3 *ker_dim0*chld_cnt],
  2193. (typename FFTW_t<Real_t>::cplx*)&buffer [i*2*n3_*ker_dim0*chld_cnt]);
  2194. //Compute flops.
  2195. #ifndef FFTW3_MKL
  2196. double add, mul, fma;
  2197. FFTW_t<Real_t>::fftw_flops(vlist_fftplan, &add, &mul, &fma);
  2198. #ifndef __INTEL_OFFLOAD0
  2199. Profile::Add_FLOP((long long)(add+mul+2*fma));
  2200. #endif
  2201. #endif
  2202. for(int i=0;i<ker_dim0*dof;i++)
  2203. for(size_t j=0;j<n3_;j++)
  2204. for(size_t k=0;k<chld_cnt;k++){
  2205. upward_equiv_fft[2*(chld_cnt*(n3_*i+j)+k)+0]=buffer[2*(n3_*(chld_cnt*i+k)+j)+0];
  2206. upward_equiv_fft[2*(chld_cnt*(n3_*i+j)+k)+1]=buffer[2*(n3_*(chld_cnt*i+k)+j)+1];
  2207. }
  2208. }
  2209. }
  2210. }
  2211. }
  2212. template <class FMMNode>
  2213. void FMM_Pts<FMMNode>::FFT_Check2Equiv(size_t dof, size_t m, size_t ker_dim1, Vector<size_t>& ifft_vec, Vector<Real_t>& ifft_scal,
  2214. Vector<Real_t>& input_data, Vector<Real_t>& output_data, Vector<Real_t>& buffer_){
  2215. size_t n1=m*2;
  2216. size_t n2=n1*n1;
  2217. size_t n3=n1*n2;
  2218. size_t n3_=n2*(n1/2+1);
  2219. size_t chld_cnt=1UL<<COORD_DIM;
  2220. size_t fftsize_out=2*n3_*dof*ker_dim1*chld_cnt;
  2221. int omp_p=omp_get_max_threads();
  2222. //Load permutation map.
  2223. size_t n=6*(m-1)*(m-1)+2;
  2224. static Vector<size_t> map;
  2225. { // Build map to reorder dnward_check
  2226. size_t n_old=map.Dim();
  2227. if(n_old!=n){
  2228. Real_t c[3]={0,0,0};
  2229. Vector<Real_t> surf=surface(m, c, (Real_t)(m-1), 0);
  2230. map.Resize(surf.Dim()/COORD_DIM);
  2231. for(size_t i=0;i<map.Dim();i++)
  2232. map[i]=((size_t)(m*2-0.5-surf[i*3]))+((size_t)(m*2-0.5-surf[i*3+1]))*n1+((size_t)(m*2-0.5-surf[i*3+2]))*n2;
  2233. //map;//.AllocDevice(true);
  2234. }
  2235. }
  2236. { // Build FFTW plan.
  2237. if(!vlist_ifft_flag){
  2238. //Build FFTW plan.
  2239. int nnn[3]={(int)n1,(int)n1,(int)n1};
  2240. Real_t *fftw_in, *fftw_out;
  2241. fftw_in = mem::aligned_new<Real_t>(2*n3_*ker_dim1*chld_cnt);
  2242. fftw_out = mem::aligned_new<Real_t>( n3 *ker_dim1*chld_cnt);
  2243. vlist_ifftplan = FFTW_t<Real_t>::fft_plan_many_dft_c2r(COORD_DIM,nnn,ker_dim1*chld_cnt,
  2244. (typename FFTW_t<Real_t>::cplx*)fftw_in, NULL, 1, n3_, (Real_t*)(fftw_out),NULL, 1, n3);
  2245. mem::aligned_delete<Real_t>(fftw_in);
  2246. mem::aligned_delete<Real_t>(fftw_out);
  2247. vlist_ifft_flag=true;
  2248. }
  2249. }
  2250. { // Offload section
  2251. assert(buffer_.Dim()>=2*fftsize_out*omp_p);
  2252. size_t n_out=ifft_vec.Dim();
  2253. #pragma omp parallel for
  2254. for(int pid=0; pid<omp_p; pid++){
  2255. size_t node_start=(n_out*(pid ))/omp_p;
  2256. size_t node_end =(n_out*(pid+1))/omp_p;
  2257. Vector<Real_t> buffer0(fftsize_out, &buffer_[fftsize_out*(2*pid+0)], false);
  2258. Vector<Real_t> buffer1(fftsize_out, &buffer_[fftsize_out*(2*pid+1)], false);
  2259. for(size_t node_idx=node_start; node_idx<node_end; node_idx++){
  2260. Vector<Real_t> dnward_check_fft(fftsize_out, &input_data[fftsize_out*node_idx], false);
  2261. Vector<Real_t> dnward_equiv(ker_dim1*n*dof*chld_cnt,&output_data[0] + ifft_vec[node_idx],false);
  2262. //De-interleave data.
  2263. for(int i=0;i<ker_dim1*dof;i++)
  2264. for(size_t j=0;j<n3_;j++)
  2265. for(size_t k=0;k<chld_cnt;k++){
  2266. buffer0[2*(n3_*(ker_dim1*dof*k+i)+j)+0]=dnward_check_fft[2*(chld_cnt*(n3_*i+j)+k)+0];
  2267. buffer0[2*(n3_*(ker_dim1*dof*k+i)+j)+1]=dnward_check_fft[2*(chld_cnt*(n3_*i+j)+k)+1];
  2268. }
  2269. // Compute FFT.
  2270. for(int i=0;i<dof;i++)
  2271. FFTW_t<Real_t>::fft_execute_dft_c2r(vlist_ifftplan, (typename FFTW_t<Real_t>::cplx*)&buffer0[i*2*n3_*ker_dim1*chld_cnt],
  2272. (Real_t*)&buffer1[i* n3 *ker_dim1*chld_cnt]);
  2273. //Compute flops.
  2274. #ifndef FFTW3_MKL
  2275. double add, mul, fma;
  2276. FFTW_t<Real_t>::fftw_flops(vlist_ifftplan, &add, &mul, &fma);
  2277. #ifndef __INTEL_OFFLOAD0
  2278. Profile::Add_FLOP((long long)(add+mul+2*fma)*dof);
  2279. #endif
  2280. #endif
  2281. // Rearrange downward check data.
  2282. for(size_t k=0;k<n;k++){
  2283. size_t idx=map[k];
  2284. for(int j1=0;j1<dof;j1++)
  2285. for(int j0=0;j0<(int)chld_cnt;j0++)
  2286. for(int i=0;i<ker_dim1;i++)
  2287. dnward_equiv[ker_dim1*(n*(dof*j0+j1)+k)+i]+=buffer1[idx+(i+(j1+j0*dof)*ker_dim1)*n3]*ifft_scal[ker_dim1*node_idx+i];
  2288. }
  2289. }
  2290. }
  2291. }
  2292. }
  2293. template<class Real_t>
  2294. inline void matmult_8x8x2(Real_t*& M_, Real_t*& IN0, Real_t*& IN1, Real_t*& OUT0, Real_t*& OUT1){
  2295. // Generic code.
  2296. Real_t out_reg000, out_reg001, out_reg010, out_reg011;
  2297. Real_t out_reg100, out_reg101, out_reg110, out_reg111;
  2298. Real_t in_reg000, in_reg001, in_reg010, in_reg011;
  2299. Real_t in_reg100, in_reg101, in_reg110, in_reg111;
  2300. Real_t m_reg000, m_reg001, m_reg010, m_reg011;
  2301. Real_t m_reg100, m_reg101, m_reg110, m_reg111;
  2302. //#pragma unroll
  2303. for(int i1=0;i1<8;i1+=2){
  2304. Real_t* IN0_=IN0;
  2305. Real_t* IN1_=IN1;
  2306. out_reg000=OUT0[ 0]; out_reg001=OUT0[ 1];
  2307. out_reg010=OUT0[ 2]; out_reg011=OUT0[ 3];
  2308. out_reg100=OUT1[ 0]; out_reg101=OUT1[ 1];
  2309. out_reg110=OUT1[ 2]; out_reg111=OUT1[ 3];
  2310. //#pragma unroll
  2311. for(int i2=0;i2<8;i2+=2){
  2312. m_reg000=M_[ 0]; m_reg001=M_[ 1];
  2313. m_reg010=M_[ 2]; m_reg011=M_[ 3];
  2314. m_reg100=M_[16]; m_reg101=M_[17];
  2315. m_reg110=M_[18]; m_reg111=M_[19];
  2316. in_reg000=IN0_[0]; in_reg001=IN0_[1];
  2317. in_reg010=IN0_[2]; in_reg011=IN0_[3];
  2318. in_reg100=IN1_[0]; in_reg101=IN1_[1];
  2319. in_reg110=IN1_[2]; in_reg111=IN1_[3];
  2320. out_reg000 += m_reg000*in_reg000 - m_reg001*in_reg001;
  2321. out_reg001 += m_reg000*in_reg001 + m_reg001*in_reg000;
  2322. out_reg010 += m_reg010*in_reg000 - m_reg011*in_reg001;
  2323. out_reg011 += m_reg010*in_reg001 + m_reg011*in_reg000;
  2324. out_reg000 += m_reg100*in_reg010 - m_reg101*in_reg011;
  2325. out_reg001 += m_reg100*in_reg011 + m_reg101*in_reg010;
  2326. out_reg010 += m_reg110*in_reg010 - m_reg111*in_reg011;
  2327. out_reg011 += m_reg110*in_reg011 + m_reg111*in_reg010;
  2328. out_reg100 += m_reg000*in_reg100 - m_reg001*in_reg101;
  2329. out_reg101 += m_reg000*in_reg101 + m_reg001*in_reg100;
  2330. out_reg110 += m_reg010*in_reg100 - m_reg011*in_reg101;
  2331. out_reg111 += m_reg010*in_reg101 + m_reg011*in_reg100;
  2332. out_reg100 += m_reg100*in_reg110 - m_reg101*in_reg111;
  2333. out_reg101 += m_reg100*in_reg111 + m_reg101*in_reg110;
  2334. out_reg110 += m_reg110*in_reg110 - m_reg111*in_reg111;
  2335. out_reg111 += m_reg110*in_reg111 + m_reg111*in_reg110;
  2336. M_+=32; // Jump to (column+2).
  2337. IN0_+=4;
  2338. IN1_+=4;
  2339. }
  2340. OUT0[ 0]=out_reg000; OUT0[ 1]=out_reg001;
  2341. OUT0[ 2]=out_reg010; OUT0[ 3]=out_reg011;
  2342. OUT1[ 0]=out_reg100; OUT1[ 1]=out_reg101;
  2343. OUT1[ 2]=out_reg110; OUT1[ 3]=out_reg111;
  2344. M_+=4-64*2; // Jump back to first column (row+2).
  2345. OUT0+=4;
  2346. OUT1+=4;
  2347. }
  2348. }
  2349. #if defined(__AVX__) || defined(__SSE3__)
  2350. template<>
  2351. inline void matmult_8x8x2<double>(double*& M_, double*& IN0, double*& IN1, double*& OUT0, double*& OUT1){
  2352. #ifdef __AVX__ //AVX code.
  2353. __m256d out00,out01,out10,out11;
  2354. __m256d out20,out21,out30,out31;
  2355. double* in0__ = IN0;
  2356. double* in1__ = IN1;
  2357. out00 = _mm256_load_pd(OUT0);
  2358. out01 = _mm256_load_pd(OUT1);
  2359. out10 = _mm256_load_pd(OUT0+4);
  2360. out11 = _mm256_load_pd(OUT1+4);
  2361. out20 = _mm256_load_pd(OUT0+8);
  2362. out21 = _mm256_load_pd(OUT1+8);
  2363. out30 = _mm256_load_pd(OUT0+12);
  2364. out31 = _mm256_load_pd(OUT1+12);
  2365. for(int i2=0;i2<8;i2+=2){
  2366. __m256d m00;
  2367. __m256d ot00;
  2368. __m256d mt0,mtt0;
  2369. __m256d in00,in00_r,in01,in01_r;
  2370. in00 = _mm256_broadcast_pd((const __m128d*)in0__);
  2371. in00_r = _mm256_permute_pd(in00,5);
  2372. in01 = _mm256_broadcast_pd((const __m128d*)in1__);
  2373. in01_r = _mm256_permute_pd(in01,5);
  2374. m00 = _mm256_load_pd(M_);
  2375. mt0 = _mm256_unpacklo_pd(m00,m00);
  2376. ot00 = _mm256_mul_pd(mt0,in00);
  2377. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2378. out00 = _mm256_add_pd(out00,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2379. ot00 = _mm256_mul_pd(mt0,in01);
  2380. out01 = _mm256_add_pd(out01,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2381. m00 = _mm256_load_pd(M_+4);
  2382. mt0 = _mm256_unpacklo_pd(m00,m00);
  2383. ot00 = _mm256_mul_pd(mt0,in00);
  2384. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2385. out10 = _mm256_add_pd(out10,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2386. ot00 = _mm256_mul_pd(mt0,in01);
  2387. out11 = _mm256_add_pd(out11,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2388. m00 = _mm256_load_pd(M_+8);
  2389. mt0 = _mm256_unpacklo_pd(m00,m00);
  2390. ot00 = _mm256_mul_pd(mt0,in00);
  2391. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2392. out20 = _mm256_add_pd(out20,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2393. ot00 = _mm256_mul_pd(mt0,in01);
  2394. out21 = _mm256_add_pd(out21,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2395. m00 = _mm256_load_pd(M_+12);
  2396. mt0 = _mm256_unpacklo_pd(m00,m00);
  2397. ot00 = _mm256_mul_pd(mt0,in00);
  2398. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2399. out30 = _mm256_add_pd(out30,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2400. ot00 = _mm256_mul_pd(mt0,in01);
  2401. out31 = _mm256_add_pd(out31,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2402. in00 = _mm256_broadcast_pd((const __m128d*) (in0__+2));
  2403. in00_r = _mm256_permute_pd(in00,5);
  2404. in01 = _mm256_broadcast_pd((const __m128d*) (in1__+2));
  2405. in01_r = _mm256_permute_pd(in01,5);
  2406. m00 = _mm256_load_pd(M_+16);
  2407. mt0 = _mm256_unpacklo_pd(m00,m00);
  2408. ot00 = _mm256_mul_pd(mt0,in00);
  2409. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2410. out00 = _mm256_add_pd(out00,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2411. ot00 = _mm256_mul_pd(mt0,in01);
  2412. out01 = _mm256_add_pd(out01,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2413. m00 = _mm256_load_pd(M_+20);
  2414. mt0 = _mm256_unpacklo_pd(m00,m00);
  2415. ot00 = _mm256_mul_pd(mt0,in00);
  2416. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2417. out10 = _mm256_add_pd(out10,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2418. ot00 = _mm256_mul_pd(mt0,in01);
  2419. out11 = _mm256_add_pd(out11,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2420. m00 = _mm256_load_pd(M_+24);
  2421. mt0 = _mm256_unpacklo_pd(m00,m00);
  2422. ot00 = _mm256_mul_pd(mt0,in00);
  2423. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2424. out20 = _mm256_add_pd(out20,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2425. ot00 = _mm256_mul_pd(mt0,in01);
  2426. out21 = _mm256_add_pd(out21,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2427. m00 = _mm256_load_pd(M_+28);
  2428. mt0 = _mm256_unpacklo_pd(m00,m00);
  2429. ot00 = _mm256_mul_pd(mt0,in00);
  2430. mtt0 = _mm256_unpackhi_pd(m00,m00);
  2431. out30 = _mm256_add_pd(out30,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in00_r)));
  2432. ot00 = _mm256_mul_pd(mt0,in01);
  2433. out31 = _mm256_add_pd(out31,_mm256_addsub_pd(ot00,_mm256_mul_pd(mtt0,in01_r)));
  2434. M_ += 32;
  2435. in0__ += 4;
  2436. in1__ += 4;
  2437. }
  2438. _mm256_store_pd(OUT0,out00);
  2439. _mm256_store_pd(OUT1,out01);
  2440. _mm256_store_pd(OUT0+4,out10);
  2441. _mm256_store_pd(OUT1+4,out11);
  2442. _mm256_store_pd(OUT0+8,out20);
  2443. _mm256_store_pd(OUT1+8,out21);
  2444. _mm256_store_pd(OUT0+12,out30);
  2445. _mm256_store_pd(OUT1+12,out31);
  2446. #elif defined __SSE3__ // SSE code.
  2447. __m128d out00, out01, out10, out11;
  2448. __m128d in00, in01, in10, in11;
  2449. __m128d m00, m01, m10, m11;
  2450. //#pragma unroll
  2451. for(int i1=0;i1<8;i1+=2){
  2452. double* IN0_=IN0;
  2453. double* IN1_=IN1;
  2454. out00 =_mm_load_pd (OUT0 );
  2455. out10 =_mm_load_pd (OUT0+2);
  2456. out01 =_mm_load_pd (OUT1 );
  2457. out11 =_mm_load_pd (OUT1+2);
  2458. //#pragma unroll
  2459. for(int i2=0;i2<8;i2+=2){
  2460. m00 =_mm_load1_pd (M_ );
  2461. m10 =_mm_load1_pd (M_+ 2);
  2462. m01 =_mm_load1_pd (M_+16);
  2463. m11 =_mm_load1_pd (M_+18);
  2464. in00 =_mm_load_pd (IN0_ );
  2465. in10 =_mm_load_pd (IN0_+2);
  2466. in01 =_mm_load_pd (IN1_ );
  2467. in11 =_mm_load_pd (IN1_+2);
  2468. out00 = _mm_add_pd (out00, _mm_mul_pd(m00 , in00 ));
  2469. out00 = _mm_add_pd (out00, _mm_mul_pd(m01 , in10 ));
  2470. out01 = _mm_add_pd (out01, _mm_mul_pd(m00 , in01 ));
  2471. out01 = _mm_add_pd (out01, _mm_mul_pd(m01 , in11 ));
  2472. out10 = _mm_add_pd (out10, _mm_mul_pd(m10 , in00 ));
  2473. out10 = _mm_add_pd (out10, _mm_mul_pd(m11 , in10 ));
  2474. out11 = _mm_add_pd (out11, _mm_mul_pd(m10 , in01 ));
  2475. out11 = _mm_add_pd (out11, _mm_mul_pd(m11 , in11 ));
  2476. m00 =_mm_load1_pd (M_+ 1);
  2477. m10 =_mm_load1_pd (M_+ 2+1);
  2478. m01 =_mm_load1_pd (M_+16+1);
  2479. m11 =_mm_load1_pd (M_+18+1);
  2480. in00 =_mm_shuffle_pd (in00,in00,_MM_SHUFFLE2(0,1));
  2481. in01 =_mm_shuffle_pd (in01,in01,_MM_SHUFFLE2(0,1));
  2482. in10 =_mm_shuffle_pd (in10,in10,_MM_SHUFFLE2(0,1));
  2483. in11 =_mm_shuffle_pd (in11,in11,_MM_SHUFFLE2(0,1));
  2484. out00 = _mm_addsub_pd(out00, _mm_mul_pd(m00, in00));
  2485. out00 = _mm_addsub_pd(out00, _mm_mul_pd(m01, in10));
  2486. out01 = _mm_addsub_pd(out01, _mm_mul_pd(m00, in01));
  2487. out01 = _mm_addsub_pd(out01, _mm_mul_pd(m01, in11));
  2488. out10 = _mm_addsub_pd(out10, _mm_mul_pd(m10, in00));
  2489. out10 = _mm_addsub_pd(out10, _mm_mul_pd(m11, in10));
  2490. out11 = _mm_addsub_pd(out11, _mm_mul_pd(m10, in01));
  2491. out11 = _mm_addsub_pd(out11, _mm_mul_pd(m11, in11));
  2492. M_+=32; // Jump to (column+2).
  2493. IN0_+=4;
  2494. IN1_+=4;
  2495. }
  2496. _mm_store_pd (OUT0 ,out00);
  2497. _mm_store_pd (OUT0+2,out10);
  2498. _mm_store_pd (OUT1 ,out01);
  2499. _mm_store_pd (OUT1+2,out11);
  2500. M_+=4-64*2; // Jump back to first column (row+2).
  2501. OUT0+=4;
  2502. OUT1+=4;
  2503. }
  2504. #endif
  2505. }
  2506. #endif
  2507. #if defined(__SSE3__)
  2508. template<>
  2509. inline void matmult_8x8x2<float>(float*& M_, float*& IN0, float*& IN1, float*& OUT0, float*& OUT1){
  2510. #if defined __SSE3__ // SSE code.
  2511. __m128 out00,out01,out10,out11;
  2512. __m128 out20,out21,out30,out31;
  2513. float* in0__ = IN0;
  2514. float* in1__ = IN1;
  2515. out00 = _mm_load_ps(OUT0);
  2516. out01 = _mm_load_ps(OUT1);
  2517. out10 = _mm_load_ps(OUT0+4);
  2518. out11 = _mm_load_ps(OUT1+4);
  2519. out20 = _mm_load_ps(OUT0+8);
  2520. out21 = _mm_load_ps(OUT1+8);
  2521. out30 = _mm_load_ps(OUT0+12);
  2522. out31 = _mm_load_ps(OUT1+12);
  2523. for(int i2=0;i2<8;i2+=2){
  2524. __m128 m00;
  2525. __m128 mt0,mtt0;
  2526. __m128 in00,in00_r,in01,in01_r;
  2527. in00 = _mm_castpd_ps(_mm_load_pd1((const double*)in0__));
  2528. in00_r = _mm_shuffle_ps(in00,in00,_MM_SHUFFLE(2,3,0,1));
  2529. in01 = _mm_castpd_ps(_mm_load_pd1((const double*)in1__));
  2530. in01_r = _mm_shuffle_ps(in01,in01,_MM_SHUFFLE(2,3,0,1));
  2531. m00 = _mm_load_ps(M_);
  2532. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2533. out00= _mm_add_ps (out00,_mm_mul_ps( mt0,in00 ));
  2534. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2535. out00= _mm_addsub_ps(out00,_mm_mul_ps(mtt0,in00_r));
  2536. out01 = _mm_add_ps (out01,_mm_mul_ps( mt0,in01 ));
  2537. out01 = _mm_addsub_ps(out01,_mm_mul_ps(mtt0,in01_r));
  2538. m00 = _mm_load_ps(M_+4);
  2539. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2540. out10= _mm_add_ps (out10,_mm_mul_ps( mt0,in00 ));
  2541. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2542. out10= _mm_addsub_ps(out10,_mm_mul_ps(mtt0,in00_r));
  2543. out11 = _mm_add_ps (out11,_mm_mul_ps( mt0,in01 ));
  2544. out11 = _mm_addsub_ps(out11,_mm_mul_ps(mtt0,in01_r));
  2545. m00 = _mm_load_ps(M_+8);
  2546. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2547. out20= _mm_add_ps (out20,_mm_mul_ps( mt0,in00 ));
  2548. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2549. out20= _mm_addsub_ps(out20,_mm_mul_ps(mtt0,in00_r));
  2550. out21 = _mm_add_ps (out21,_mm_mul_ps( mt0,in01 ));
  2551. out21 = _mm_addsub_ps(out21,_mm_mul_ps(mtt0,in01_r));
  2552. m00 = _mm_load_ps(M_+12);
  2553. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2554. out30= _mm_add_ps (out30,_mm_mul_ps( mt0, in00));
  2555. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2556. out30= _mm_addsub_ps(out30,_mm_mul_ps(mtt0,in00_r));
  2557. out31 = _mm_add_ps (out31,_mm_mul_ps( mt0,in01 ));
  2558. out31 = _mm_addsub_ps(out31,_mm_mul_ps(mtt0,in01_r));
  2559. in00 = _mm_castpd_ps(_mm_load_pd1((const double*) (in0__+2)));
  2560. in00_r = _mm_shuffle_ps(in00,in00,_MM_SHUFFLE(2,3,0,1));
  2561. in01 = _mm_castpd_ps(_mm_load_pd1((const double*) (in1__+2)));
  2562. in01_r = _mm_shuffle_ps(in01,in01,_MM_SHUFFLE(2,3,0,1));
  2563. m00 = _mm_load_ps(M_+16);
  2564. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2565. out00= _mm_add_ps (out00,_mm_mul_ps( mt0,in00 ));
  2566. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2567. out00= _mm_addsub_ps(out00,_mm_mul_ps(mtt0,in00_r));
  2568. out01 = _mm_add_ps (out01,_mm_mul_ps( mt0,in01 ));
  2569. out01 = _mm_addsub_ps(out01,_mm_mul_ps(mtt0,in01_r));
  2570. m00 = _mm_load_ps(M_+20);
  2571. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2572. out10= _mm_add_ps (out10,_mm_mul_ps( mt0,in00 ));
  2573. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2574. out10= _mm_addsub_ps(out10,_mm_mul_ps(mtt0,in00_r));
  2575. out11 = _mm_add_ps (out11,_mm_mul_ps( mt0,in01 ));
  2576. out11 = _mm_addsub_ps(out11,_mm_mul_ps(mtt0,in01_r));
  2577. m00 = _mm_load_ps(M_+24);
  2578. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2579. out20= _mm_add_ps (out20,_mm_mul_ps( mt0,in00 ));
  2580. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2581. out20= _mm_addsub_ps(out20,_mm_mul_ps(mtt0,in00_r));
  2582. out21 = _mm_add_ps (out21,_mm_mul_ps( mt0,in01 ));
  2583. out21 = _mm_addsub_ps(out21,_mm_mul_ps(mtt0,in01_r));
  2584. m00 = _mm_load_ps(M_+28);
  2585. mt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(2,2,0,0));
  2586. out30= _mm_add_ps (out30,_mm_mul_ps( mt0,in00 ));
  2587. mtt0 = _mm_shuffle_ps(m00,m00,_MM_SHUFFLE(3,3,1,1));
  2588. out30= _mm_addsub_ps(out30,_mm_mul_ps(mtt0,in00_r));
  2589. out31 = _mm_add_ps (out31,_mm_mul_ps( mt0,in01 ));
  2590. out31 = _mm_addsub_ps(out31,_mm_mul_ps(mtt0,in01_r));
  2591. M_ += 32;
  2592. in0__ += 4;
  2593. in1__ += 4;
  2594. }
  2595. _mm_store_ps(OUT0,out00);
  2596. _mm_store_ps(OUT1,out01);
  2597. _mm_store_ps(OUT0+4,out10);
  2598. _mm_store_ps(OUT1+4,out11);
  2599. _mm_store_ps(OUT0+8,out20);
  2600. _mm_store_ps(OUT1+8,out21);
  2601. _mm_store_ps(OUT0+12,out30);
  2602. _mm_store_ps(OUT1+12,out31);
  2603. #endif
  2604. }
  2605. #endif
  2606. template <class Real_t>
  2607. void VListHadamard(size_t dof, size_t M_dim, size_t ker_dim0, size_t ker_dim1, Vector<size_t>& interac_dsp,
  2608. Vector<size_t>& interac_vec, Vector<Real_t*>& precomp_mat, Vector<Real_t>& fft_in, Vector<Real_t>& fft_out){
  2609. size_t chld_cnt=1UL<<COORD_DIM;
  2610. size_t fftsize_in =M_dim*ker_dim0*chld_cnt*2;
  2611. size_t fftsize_out=M_dim*ker_dim1*chld_cnt*2;
  2612. Real_t* zero_vec0=mem::aligned_new<Real_t>(fftsize_in );
  2613. Real_t* zero_vec1=mem::aligned_new<Real_t>(fftsize_out);
  2614. size_t n_out=fft_out.Dim()/fftsize_out;
  2615. // Set buff_out to zero.
  2616. #pragma omp parallel for
  2617. for(size_t k=0;k<n_out;k++){
  2618. Vector<Real_t> dnward_check_fft(fftsize_out, &fft_out[k*fftsize_out], false);
  2619. dnward_check_fft.SetZero();
  2620. }
  2621. // Build list of interaction pairs (in, out vectors).
  2622. size_t mat_cnt=precomp_mat.Dim();
  2623. size_t blk1_cnt=interac_dsp.Dim()/mat_cnt;
  2624. const size_t V_BLK_SIZE=V_BLK_CACHE*64/sizeof(Real_t);
  2625. Real_t** IN_ =mem::aligned_new<Real_t*>(2*V_BLK_SIZE*blk1_cnt*mat_cnt);
  2626. Real_t** OUT_=mem::aligned_new<Real_t*>(2*V_BLK_SIZE*blk1_cnt*mat_cnt);
  2627. #pragma omp parallel for
  2628. for(size_t interac_blk1=0; interac_blk1<blk1_cnt*mat_cnt; interac_blk1++){
  2629. size_t interac_dsp0 = (interac_blk1==0?0:interac_dsp[interac_blk1-1]);
  2630. size_t interac_dsp1 = interac_dsp[interac_blk1 ] ;
  2631. size_t interac_cnt = interac_dsp1-interac_dsp0;
  2632. for(size_t j=0;j<interac_cnt;j++){
  2633. IN_ [2*V_BLK_SIZE*interac_blk1 +j]=&fft_in [interac_vec[(interac_dsp0+j)*2+0]];
  2634. OUT_[2*V_BLK_SIZE*interac_blk1 +j]=&fft_out[interac_vec[(interac_dsp0+j)*2+1]];
  2635. }
  2636. IN_ [2*V_BLK_SIZE*interac_blk1 +interac_cnt]=zero_vec0;
  2637. OUT_[2*V_BLK_SIZE*interac_blk1 +interac_cnt]=zero_vec1;
  2638. }
  2639. int omp_p=omp_get_max_threads();
  2640. #pragma omp parallel for
  2641. for(int pid=0; pid<omp_p; pid++){
  2642. size_t a=( pid *M_dim)/omp_p;
  2643. size_t b=((pid+1)*M_dim)/omp_p;
  2644. for(int in_dim=0;in_dim<ker_dim0;in_dim++)
  2645. for(int ot_dim=0;ot_dim<ker_dim1;ot_dim++)
  2646. for(size_t blk1=0; blk1<blk1_cnt; blk1++)
  2647. for(size_t k=a; k< b; k++)
  2648. for(size_t mat_indx=0; mat_indx< mat_cnt;mat_indx++){
  2649. size_t interac_blk1 = blk1*mat_cnt+mat_indx;
  2650. size_t interac_dsp0 = (interac_blk1==0?0:interac_dsp[interac_blk1-1]);
  2651. size_t interac_dsp1 = interac_dsp[interac_blk1 ] ;
  2652. size_t interac_cnt = interac_dsp1-interac_dsp0;
  2653. Real_t** IN = IN_ + 2*V_BLK_SIZE*interac_blk1;
  2654. Real_t** OUT= OUT_+ 2*V_BLK_SIZE*interac_blk1;
  2655. Real_t* M = precomp_mat[mat_indx] + k*chld_cnt*chld_cnt*2 + (ot_dim+in_dim*ker_dim1)*M_dim*128;
  2656. {
  2657. for(size_t j=0;j<interac_cnt;j+=2){
  2658. Real_t* M_ = M;
  2659. Real_t* IN0 = IN [j+0] + (in_dim*M_dim+k)*chld_cnt*2;
  2660. Real_t* IN1 = IN [j+1] + (in_dim*M_dim+k)*chld_cnt*2;
  2661. Real_t* OUT0 = OUT[j+0] + (ot_dim*M_dim+k)*chld_cnt*2;
  2662. Real_t* OUT1 = OUT[j+1] + (ot_dim*M_dim+k)*chld_cnt*2;
  2663. #ifdef __SSE__
  2664. if (j+2 < interac_cnt) { // Prefetch
  2665. _mm_prefetch(((char *)(IN[j+2] + (in_dim*M_dim+k)*chld_cnt*2)), _MM_HINT_T0);
  2666. _mm_prefetch(((char *)(IN[j+2] + (in_dim*M_dim+k)*chld_cnt*2) + 64), _MM_HINT_T0);
  2667. _mm_prefetch(((char *)(IN[j+3] + (in_dim*M_dim+k)*chld_cnt*2)), _MM_HINT_T0);
  2668. _mm_prefetch(((char *)(IN[j+3] + (in_dim*M_dim+k)*chld_cnt*2) + 64), _MM_HINT_T0);
  2669. _mm_prefetch(((char *)(OUT[j+2] + (ot_dim*M_dim+k)*chld_cnt*2)), _MM_HINT_T0);
  2670. _mm_prefetch(((char *)(OUT[j+2] + (ot_dim*M_dim+k)*chld_cnt*2) + 64), _MM_HINT_T0);
  2671. _mm_prefetch(((char *)(OUT[j+3] + (ot_dim*M_dim+k)*chld_cnt*2)), _MM_HINT_T0);
  2672. _mm_prefetch(((char *)(OUT[j+3] + (ot_dim*M_dim+k)*chld_cnt*2) + 64), _MM_HINT_T0);
  2673. }
  2674. #endif
  2675. matmult_8x8x2(M_, IN0, IN1, OUT0, OUT1);
  2676. }
  2677. }
  2678. }
  2679. }
  2680. // Compute flops.
  2681. {
  2682. Profile::Add_FLOP(8*8*8*(interac_vec.Dim()/2)*M_dim*ker_dim0*ker_dim1*dof);
  2683. }
  2684. // Free memory
  2685. mem::aligned_delete<Real_t*>(IN_ );
  2686. mem::aligned_delete<Real_t*>(OUT_);
  2687. mem::aligned_delete<Real_t>(zero_vec0);
  2688. mem::aligned_delete<Real_t>(zero_vec1);
  2689. }
  2690. template <class FMMNode>
  2691. void FMM_Pts<FMMNode>::V_ListSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  2692. if(!this->MultipoleOrder()) return;
  2693. if(level==0) return;
  2694. { // Set setup_data
  2695. setup_data.level=level;
  2696. setup_data.kernel=kernel->k_m2l;
  2697. setup_data.interac_type.resize(1);
  2698. setup_data.interac_type[0]=V1_Type;
  2699. setup_data. input_data=&buff[0];
  2700. setup_data.output_data=&buff[1];
  2701. Vector<FMMNode_t*>& nodes_in =n_list[2];
  2702. Vector<FMMNode_t*>& nodes_out=n_list[3];
  2703. setup_data.nodes_in .clear();
  2704. setup_data.nodes_out.clear();
  2705. for(size_t i=0;i<nodes_in .Dim();i++) if((nodes_in [i]->Depth()==level-1 || level==-1) && nodes_in [i]->pt_cnt[0]) setup_data.nodes_in .push_back(nodes_in [i]);
  2706. for(size_t i=0;i<nodes_out.Dim();i++) if((nodes_out[i]->Depth()==level-1 || level==-1) && nodes_out[i]->pt_cnt[1]) setup_data.nodes_out.push_back(nodes_out[i]);
  2707. }
  2708. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  2709. std::vector<void*>& nodes_out=setup_data.nodes_out;
  2710. std::vector<Vector<Real_t>*>& input_vector=setup_data. input_vector; input_vector.clear();
  2711. std::vector<Vector<Real_t>*>& output_vector=setup_data.output_vector; output_vector.clear();
  2712. for(size_t i=0;i<nodes_in .size();i++) input_vector.push_back(&((FMMData*)((FMMNode*)((FMMNode*)nodes_in [i])->Child(0))->FMMData())->upward_equiv);
  2713. for(size_t i=0;i<nodes_out.size();i++) output_vector.push_back(&((FMMData*)((FMMNode*)((FMMNode*)nodes_out[i])->Child(0))->FMMData())->dnward_equiv);
  2714. /////////////////////////////////////////////////////////////////////////////
  2715. Real_t eps=1e-10;
  2716. size_t n_in =nodes_in .size();
  2717. size_t n_out=nodes_out.size();
  2718. // Setup precomputed data.
  2719. //if(setup_data.precomp_data->Dim(0)*setup_data.precomp_data->Dim(1)==0) SetupPrecomp(setup_data,device);
  2720. // Build interac_data
  2721. Profile::Tic("Interac-Data",&this->comm,true,25);
  2722. Matrix<char>& interac_data=setup_data.interac_data;
  2723. if(n_out>0 && n_in >0){ // Build precomp_data, interac_data
  2724. size_t precomp_offset=0;
  2725. Mat_Type& interac_type=setup_data.interac_type[0];
  2726. size_t mat_cnt=this->interac_list.ListCount(interac_type);
  2727. Matrix<size_t> precomp_data_offset;
  2728. std::vector<size_t> interac_mat;
  2729. std::vector<Real_t*> interac_mat_ptr;
  2730. #if 0 // Since we skip SetupPrecomp for V-list
  2731. { // Load precomp_data for interac_type.
  2732. struct HeaderData{
  2733. size_t total_size;
  2734. size_t level;
  2735. size_t mat_cnt ;
  2736. size_t max_depth;
  2737. };
  2738. Matrix<char>& precomp_data=*setup_data.precomp_data;
  2739. char* indx_ptr=precomp_data[0]+precomp_offset;
  2740. HeaderData& header=*(HeaderData*)indx_ptr;indx_ptr+=sizeof(HeaderData);
  2741. precomp_data_offset.ReInit(header.mat_cnt,1+(2+2)*header.max_depth, (size_t*)indx_ptr, false);
  2742. precomp_offset+=header.total_size;
  2743. for(size_t mat_id=0;mat_id<mat_cnt;mat_id++){
  2744. Matrix<Real_t>& M0 = this->mat->Mat(level, interac_type, mat_id);
  2745. assert(M0.Dim(0)>0 && M0.Dim(1)>0); UNUSED(M0);
  2746. interac_mat.push_back(precomp_data_offset[mat_id][0]);
  2747. }
  2748. }
  2749. #else
  2750. {
  2751. for(size_t mat_id=0;mat_id<mat_cnt;mat_id++){
  2752. Matrix<Real_t>& M = this->mat->Mat(level, interac_type, mat_id);
  2753. interac_mat_ptr.push_back(&M[0][0]);
  2754. }
  2755. }
  2756. #endif
  2757. size_t dof;
  2758. size_t m=MultipoleOrder();
  2759. size_t ker_dim0=setup_data.kernel->ker_dim[0];
  2760. size_t ker_dim1=setup_data.kernel->ker_dim[1];
  2761. size_t fftsize;
  2762. {
  2763. size_t n1=m*2;
  2764. size_t n2=n1*n1;
  2765. size_t n3_=n2*(n1/2+1);
  2766. size_t chld_cnt=1UL<<COORD_DIM;
  2767. fftsize=2*n3_*chld_cnt;
  2768. dof=1;
  2769. }
  2770. int omp_p=omp_get_max_threads();
  2771. size_t buff_size=DEVICE_BUFFER_SIZE*1024l*1024l;
  2772. size_t n_blk0=2*fftsize*dof*(ker_dim0*n_in +ker_dim1*n_out)*sizeof(Real_t)/buff_size;
  2773. if(n_blk0==0) n_blk0=1;
  2774. std::vector<std::vector<size_t> > fft_vec(n_blk0);
  2775. std::vector<std::vector<size_t> > ifft_vec(n_blk0);
  2776. std::vector<std::vector<Real_t> > fft_scl(n_blk0);
  2777. std::vector<std::vector<Real_t> > ifft_scl(n_blk0);
  2778. std::vector<std::vector<size_t> > interac_vec(n_blk0);
  2779. std::vector<std::vector<size_t> > interac_dsp(n_blk0);
  2780. {
  2781. Matrix<Real_t>& input_data=*setup_data. input_data;
  2782. Matrix<Real_t>& output_data=*setup_data.output_data;
  2783. std::vector<std::vector<FMMNode*> > nodes_blk_in (n_blk0);
  2784. std::vector<std::vector<FMMNode*> > nodes_blk_out(n_blk0);
  2785. Vector<Real_t> src_scal=this->kernel->k_m2l->src_scal;
  2786. Vector<Real_t> trg_scal=this->kernel->k_m2l->trg_scal;
  2787. for(size_t i=0;i<n_in;i++) ((FMMNode*)nodes_in[i])->node_id=i;
  2788. for(size_t blk0=0;blk0<n_blk0;blk0++){
  2789. size_t blk0_start=(n_out* blk0 )/n_blk0;
  2790. size_t blk0_end =(n_out*(blk0+1))/n_blk0;
  2791. std::vector<FMMNode*>& nodes_in_ =nodes_blk_in [blk0];
  2792. std::vector<FMMNode*>& nodes_out_=nodes_blk_out[blk0];
  2793. { // Build node list for blk0.
  2794. std::set<void*> nodes_in;
  2795. for(size_t i=blk0_start;i<blk0_end;i++){
  2796. nodes_out_.push_back((FMMNode*)nodes_out[i]);
  2797. Vector<FMMNode*>& lst=((FMMNode*)nodes_out[i])->interac_list[interac_type];
  2798. for(size_t k=0;k<mat_cnt;k++) if(lst[k]!=NULL && lst[k]->pt_cnt[0]) nodes_in.insert(lst[k]);
  2799. }
  2800. for(std::set<void*>::iterator node=nodes_in.begin(); node != nodes_in.end(); node++){
  2801. nodes_in_.push_back((FMMNode*)*node);
  2802. }
  2803. size_t input_dim=nodes_in_ .size()*ker_dim0*dof*fftsize;
  2804. size_t output_dim=nodes_out_.size()*ker_dim1*dof*fftsize;
  2805. size_t buffer_dim=2*(ker_dim0+ker_dim1)*dof*fftsize*omp_p;
  2806. if(buff_size<(input_dim + output_dim + buffer_dim)*sizeof(Real_t))
  2807. buff_size=(input_dim + output_dim + buffer_dim)*sizeof(Real_t);
  2808. }
  2809. { // Set fft vectors.
  2810. for(size_t i=0;i<nodes_in_ .size();i++) fft_vec[blk0].push_back((size_t)(& input_vector[nodes_in_[i]->node_id][0][0]- input_data[0]));
  2811. for(size_t i=0;i<nodes_out_.size();i++)ifft_vec[blk0].push_back((size_t)(&output_vector[blk0_start + i ][0][0]-output_data[0]));
  2812. size_t scal_dim0=src_scal.Dim();
  2813. size_t scal_dim1=trg_scal.Dim();
  2814. fft_scl [blk0].resize(nodes_in_ .size()*scal_dim0);
  2815. ifft_scl[blk0].resize(nodes_out_.size()*scal_dim1);
  2816. for(size_t i=0;i<nodes_in_ .size();i++){
  2817. size_t depth=nodes_in_[i]->Depth()+1;
  2818. for(size_t j=0;j<scal_dim0;j++){
  2819. fft_scl[blk0][i*scal_dim0+j]=pow(2.0, src_scal[j]*depth);
  2820. }
  2821. }
  2822. for(size_t i=0;i<nodes_out_.size();i++){
  2823. size_t depth=nodes_out_[i]->Depth()+1;
  2824. for(size_t j=0;j<scal_dim1;j++){
  2825. ifft_scl[blk0][i*scal_dim1+j]=pow(2.0, trg_scal[j]*depth);
  2826. }
  2827. }
  2828. }
  2829. }
  2830. for(size_t blk0=0;blk0<n_blk0;blk0++){ // Hadamard interactions.
  2831. std::vector<FMMNode*>& nodes_in_ =nodes_blk_in [blk0];
  2832. std::vector<FMMNode*>& nodes_out_=nodes_blk_out[blk0];
  2833. for(size_t i=0;i<nodes_in_.size();i++) nodes_in_[i]->node_id=i;
  2834. { // Next blocking level.
  2835. size_t n_blk1=nodes_out_.size()*(2)*sizeof(Real_t)/(64*V_BLK_CACHE);
  2836. if(n_blk1==0) n_blk1=1;
  2837. size_t interac_dsp_=0;
  2838. for(size_t blk1=0;blk1<n_blk1;blk1++){
  2839. size_t blk1_start=(nodes_out_.size()* blk1 )/n_blk1;
  2840. size_t blk1_end =(nodes_out_.size()*(blk1+1))/n_blk1;
  2841. for(size_t k=0;k<mat_cnt;k++){
  2842. for(size_t i=blk1_start;i<blk1_end;i++){
  2843. Vector<FMMNode*>& lst=((FMMNode*)nodes_out_[i])->interac_list[interac_type];
  2844. if(lst[k]!=NULL && lst[k]->pt_cnt[0]){
  2845. interac_vec[blk0].push_back(lst[k]->node_id*fftsize*ker_dim0*dof);
  2846. interac_vec[blk0].push_back( i *fftsize*ker_dim1*dof);
  2847. interac_dsp_++;
  2848. }
  2849. }
  2850. interac_dsp[blk0].push_back(interac_dsp_);
  2851. }
  2852. }
  2853. }
  2854. }
  2855. }
  2856. { // Set interac_data.
  2857. size_t data_size=sizeof(size_t)*6; // buff_size, m, dof, ker_dim0, ker_dim1, n_blk0
  2858. for(size_t blk0=0;blk0<n_blk0;blk0++){
  2859. data_size+=sizeof(size_t)+ fft_vec[blk0].size()*sizeof(size_t);
  2860. data_size+=sizeof(size_t)+ ifft_vec[blk0].size()*sizeof(size_t);
  2861. data_size+=sizeof(size_t)+ fft_scl[blk0].size()*sizeof(Real_t);
  2862. data_size+=sizeof(size_t)+ ifft_scl[blk0].size()*sizeof(Real_t);
  2863. data_size+=sizeof(size_t)+interac_vec[blk0].size()*sizeof(size_t);
  2864. data_size+=sizeof(size_t)+interac_dsp[blk0].size()*sizeof(size_t);
  2865. }
  2866. data_size+=sizeof(size_t)+interac_mat.size()*sizeof(size_t);
  2867. data_size+=sizeof(size_t)+interac_mat_ptr.size()*sizeof(Real_t*);
  2868. if(data_size>interac_data.Dim(0)*interac_data.Dim(1))
  2869. interac_data.ReInit(1,data_size);
  2870. char* data_ptr=&interac_data[0][0];
  2871. ((size_t*)data_ptr)[0]=buff_size; data_ptr+=sizeof(size_t);
  2872. ((size_t*)data_ptr)[0]= m; data_ptr+=sizeof(size_t);
  2873. ((size_t*)data_ptr)[0]= dof; data_ptr+=sizeof(size_t);
  2874. ((size_t*)data_ptr)[0]= ker_dim0; data_ptr+=sizeof(size_t);
  2875. ((size_t*)data_ptr)[0]= ker_dim1; data_ptr+=sizeof(size_t);
  2876. ((size_t*)data_ptr)[0]= n_blk0; data_ptr+=sizeof(size_t);
  2877. ((size_t*)data_ptr)[0]= interac_mat.size(); data_ptr+=sizeof(size_t);
  2878. mem::memcopy(data_ptr, &interac_mat[0], interac_mat.size()*sizeof(size_t));
  2879. data_ptr+=interac_mat.size()*sizeof(size_t);
  2880. ((size_t*)data_ptr)[0]= interac_mat_ptr.size(); data_ptr+=sizeof(size_t);
  2881. mem::memcopy(data_ptr, &interac_mat_ptr[0], interac_mat_ptr.size()*sizeof(Real_t*));
  2882. data_ptr+=interac_mat_ptr.size()*sizeof(Real_t*);
  2883. for(size_t blk0=0;blk0<n_blk0;blk0++){
  2884. ((size_t*)data_ptr)[0]= fft_vec[blk0].size(); data_ptr+=sizeof(size_t);
  2885. mem::memcopy(data_ptr, & fft_vec[blk0][0], fft_vec[blk0].size()*sizeof(size_t));
  2886. data_ptr+= fft_vec[blk0].size()*sizeof(size_t);
  2887. ((size_t*)data_ptr)[0]=ifft_vec[blk0].size(); data_ptr+=sizeof(size_t);
  2888. mem::memcopy(data_ptr, &ifft_vec[blk0][0], ifft_vec[blk0].size()*sizeof(size_t));
  2889. data_ptr+=ifft_vec[blk0].size()*sizeof(size_t);
  2890. ((size_t*)data_ptr)[0]= fft_scl[blk0].size(); data_ptr+=sizeof(size_t);
  2891. mem::memcopy(data_ptr, & fft_scl[blk0][0], fft_scl[blk0].size()*sizeof(Real_t));
  2892. data_ptr+= fft_scl[blk0].size()*sizeof(Real_t);
  2893. ((size_t*)data_ptr)[0]=ifft_scl[blk0].size(); data_ptr+=sizeof(size_t);
  2894. mem::memcopy(data_ptr, &ifft_scl[blk0][0], ifft_scl[blk0].size()*sizeof(Real_t));
  2895. data_ptr+=ifft_scl[blk0].size()*sizeof(Real_t);
  2896. ((size_t*)data_ptr)[0]=interac_vec[blk0].size(); data_ptr+=sizeof(size_t);
  2897. mem::memcopy(data_ptr, &interac_vec[blk0][0], interac_vec[blk0].size()*sizeof(size_t));
  2898. data_ptr+=interac_vec[blk0].size()*sizeof(size_t);
  2899. ((size_t*)data_ptr)[0]=interac_dsp[blk0].size(); data_ptr+=sizeof(size_t);
  2900. mem::memcopy(data_ptr, &interac_dsp[blk0][0], interac_dsp[blk0].size()*sizeof(size_t));
  2901. data_ptr+=interac_dsp[blk0].size()*sizeof(size_t);
  2902. }
  2903. }
  2904. }
  2905. Profile::Toc();
  2906. if(device){ // Host2Device
  2907. Profile::Tic("Host2Device",&this->comm,false,25);
  2908. setup_data.interac_data. AllocDevice(true);
  2909. Profile::Toc();
  2910. }
  2911. }
  2912. template <class FMMNode>
  2913. void FMM_Pts<FMMNode>::V_List (SetupData<Real_t>& setup_data, bool device){
  2914. if(!this->MultipoleOrder()) return;
  2915. assert(!device); //Can not run on accelerator yet.
  2916. int np;
  2917. MPI_Comm_size(comm,&np);
  2918. if(setup_data.interac_data.Dim(0)==0 || setup_data.interac_data.Dim(1)==0){
  2919. if(np>1) Profile::Tic("Host2Device",&this->comm,false,25);
  2920. if(np>1) Profile::Toc();
  2921. return;
  2922. }
  2923. Profile::Tic("Host2Device",&this->comm,false,25);
  2924. int level=setup_data.level;
  2925. size_t buff_size=*((size_t*)&setup_data.interac_data[0][0]);
  2926. typename Vector<char>::Device buff;
  2927. //typename Matrix<char>::Device precomp_data;
  2928. typename Matrix<char>::Device interac_data;
  2929. typename Matrix<Real_t>::Device input_data;
  2930. typename Matrix<Real_t>::Device output_data;
  2931. if(device){
  2932. if(this->dev_buffer.Dim()<buff_size) this->dev_buffer.ReInit(buff_size);
  2933. buff = this-> dev_buffer. AllocDevice(false);
  2934. //precomp_data= setup_data.precomp_data->AllocDevice(false);
  2935. interac_data= setup_data.interac_data. AllocDevice(false);
  2936. input_data = setup_data. input_data->AllocDevice(false);
  2937. output_data = setup_data. output_data->AllocDevice(false);
  2938. }else{
  2939. if(this->dev_buffer.Dim()<buff_size) this->dev_buffer.ReInit(buff_size);
  2940. buff = this-> dev_buffer;
  2941. //precomp_data=*setup_data.precomp_data;
  2942. interac_data= setup_data.interac_data;
  2943. input_data =*setup_data. input_data;
  2944. output_data =*setup_data. output_data;
  2945. }
  2946. Profile::Toc();
  2947. { // Offloaded computation.
  2948. // Set interac_data.
  2949. size_t m, dof, ker_dim0, ker_dim1, n_blk0;
  2950. std::vector<Vector<size_t> > fft_vec;
  2951. std::vector<Vector<size_t> > ifft_vec;
  2952. std::vector<Vector<Real_t> > fft_scl;
  2953. std::vector<Vector<Real_t> > ifft_scl;
  2954. std::vector<Vector<size_t> > interac_vec;
  2955. std::vector<Vector<size_t> > interac_dsp;
  2956. Vector<Real_t*> precomp_mat;
  2957. { // Set interac_data.
  2958. char* data_ptr=&interac_data[0][0];
  2959. buff_size=((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  2960. m =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  2961. dof =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  2962. ker_dim0 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  2963. ker_dim1 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  2964. n_blk0 =((size_t*)data_ptr)[0]; data_ptr+=sizeof(size_t);
  2965. fft_vec .resize(n_blk0);
  2966. ifft_vec.resize(n_blk0);
  2967. fft_scl .resize(n_blk0);
  2968. ifft_scl.resize(n_blk0);
  2969. interac_vec.resize(n_blk0);
  2970. interac_dsp.resize(n_blk0);
  2971. Vector<size_t> interac_mat;
  2972. interac_mat.ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  2973. data_ptr+=sizeof(size_t)+interac_mat.Dim()*sizeof(size_t);
  2974. Vector<Real_t*> interac_mat_ptr;
  2975. interac_mat_ptr.ReInit(((size_t*)data_ptr)[0],(Real_t**)(data_ptr+sizeof(size_t)),false);
  2976. data_ptr+=sizeof(size_t)+interac_mat_ptr.Dim()*sizeof(Real_t*);
  2977. #if 0 // Since we skip SetupPrecomp for V-list
  2978. precomp_mat.Resize(interac_mat.Dim());
  2979. for(size_t i=0;i<interac_mat.Dim();i++){
  2980. precomp_mat[i]=(Real_t*)(precomp_data[0]+interac_mat[i]);
  2981. }
  2982. #else
  2983. precomp_mat.Resize(interac_mat_ptr.Dim());
  2984. for(size_t i=0;i<interac_mat_ptr.Dim();i++){
  2985. precomp_mat[i]=interac_mat_ptr[i];
  2986. }
  2987. #endif
  2988. for(size_t blk0=0;blk0<n_blk0;blk0++){
  2989. fft_vec[blk0].ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  2990. data_ptr+=sizeof(size_t)+fft_vec[blk0].Dim()*sizeof(size_t);
  2991. ifft_vec[blk0].ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  2992. data_ptr+=sizeof(size_t)+ifft_vec[blk0].Dim()*sizeof(size_t);
  2993. fft_scl[blk0].ReInit(((size_t*)data_ptr)[0],(Real_t*)(data_ptr+sizeof(size_t)),false);
  2994. data_ptr+=sizeof(size_t)+fft_scl[blk0].Dim()*sizeof(Real_t);
  2995. ifft_scl[blk0].ReInit(((size_t*)data_ptr)[0],(Real_t*)(data_ptr+sizeof(size_t)),false);
  2996. data_ptr+=sizeof(size_t)+ifft_scl[blk0].Dim()*sizeof(Real_t);
  2997. interac_vec[blk0].ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  2998. data_ptr+=sizeof(size_t)+interac_vec[blk0].Dim()*sizeof(size_t);
  2999. interac_dsp[blk0].ReInit(((size_t*)data_ptr)[0],(size_t*)(data_ptr+sizeof(size_t)),false);
  3000. data_ptr+=sizeof(size_t)+interac_dsp[blk0].Dim()*sizeof(size_t);
  3001. }
  3002. }
  3003. int omp_p=omp_get_max_threads();
  3004. size_t M_dim, fftsize;
  3005. {
  3006. size_t n1=m*2;
  3007. size_t n2=n1*n1;
  3008. size_t n3_=n2*(n1/2+1);
  3009. size_t chld_cnt=1UL<<COORD_DIM;
  3010. fftsize=2*n3_*chld_cnt;
  3011. M_dim=n3_;
  3012. }
  3013. for(size_t blk0=0;blk0<n_blk0;blk0++){ // interactions
  3014. size_t n_in = fft_vec[blk0].Dim();
  3015. size_t n_out=ifft_vec[blk0].Dim();
  3016. size_t input_dim=n_in *ker_dim0*dof*fftsize;
  3017. size_t output_dim=n_out*ker_dim1*dof*fftsize;
  3018. size_t buffer_dim=2*(ker_dim0+ker_dim1)*dof*fftsize*omp_p;
  3019. Vector<Real_t> fft_in ( input_dim, (Real_t*)&buff[ 0 ],false);
  3020. Vector<Real_t> fft_out(output_dim, (Real_t*)&buff[ input_dim *sizeof(Real_t)],false);
  3021. Vector<Real_t> buffer(buffer_dim, (Real_t*)&buff[(input_dim+output_dim)*sizeof(Real_t)],false);
  3022. { // FFT
  3023. if(np==1) Profile::Tic("FFT",&comm,false,100);
  3024. Vector<Real_t> input_data_( input_data.dim[0]* input_data.dim[1], input_data[0], false);
  3025. FFT_UpEquiv(dof, m, ker_dim0, fft_vec[blk0], fft_scl[blk0], input_data_, fft_in, buffer);
  3026. if(np==1) Profile::Toc();
  3027. }
  3028. { // Hadamard
  3029. #ifdef PVFMM_HAVE_PAPI
  3030. #ifdef __VERBOSE__
  3031. std::cout << "Starting counters new\n";
  3032. if (PAPI_start(EventSet) != PAPI_OK) std::cout << "handle_error3" << std::endl;
  3033. #endif
  3034. #endif
  3035. if(np==1) Profile::Tic("HadamardProduct",&comm,false,100);
  3036. VListHadamard<Real_t>(dof, M_dim, ker_dim0, ker_dim1, interac_dsp[blk0], interac_vec[blk0], precomp_mat, fft_in, fft_out);
  3037. if(np==1) Profile::Toc();
  3038. #ifdef PVFMM_HAVE_PAPI
  3039. #ifdef __VERBOSE__
  3040. if (PAPI_stop(EventSet, values) != PAPI_OK) std::cout << "handle_error4" << std::endl;
  3041. std::cout << "Stopping counters\n";
  3042. #endif
  3043. #endif
  3044. }
  3045. { // IFFT
  3046. if(np==1) Profile::Tic("IFFT",&comm,false,100);
  3047. Vector<Real_t> output_data_(output_data.dim[0]*output_data.dim[1], output_data[0], false);
  3048. FFT_Check2Equiv(dof, m, ker_dim1, ifft_vec[blk0], ifft_scl[blk0], fft_out, output_data_, buffer);
  3049. if(np==1) Profile::Toc();
  3050. }
  3051. }
  3052. }
  3053. }
  3054. template <class FMMNode>
  3055. void FMM_Pts<FMMNode>::Down2DownSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  3056. if(!this->MultipoleOrder()) return;
  3057. { // Set setup_data
  3058. setup_data.level=level;
  3059. setup_data.kernel=kernel->k_l2l;
  3060. setup_data.interac_type.resize(1);
  3061. setup_data.interac_type[0]=D2D_Type;
  3062. setup_data. input_data=&buff[1];
  3063. setup_data.output_data=&buff[1];
  3064. Vector<FMMNode_t*>& nodes_in =n_list[1];
  3065. Vector<FMMNode_t*>& nodes_out=n_list[1];
  3066. setup_data.nodes_in .clear();
  3067. setup_data.nodes_out.clear();
  3068. for(size_t i=0;i<nodes_in .Dim();i++) if((nodes_in [i]->Depth()==level-1) && nodes_in [i]->pt_cnt[1]) setup_data.nodes_in .push_back(nodes_in [i]);
  3069. for(size_t i=0;i<nodes_out.Dim();i++) if((nodes_out[i]->Depth()==level ) && nodes_out[i]->pt_cnt[1]) setup_data.nodes_out.push_back(nodes_out[i]);
  3070. }
  3071. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  3072. std::vector<void*>& nodes_out=setup_data.nodes_out;
  3073. std::vector<Vector<Real_t>*>& input_vector=setup_data. input_vector; input_vector.clear();
  3074. std::vector<Vector<Real_t>*>& output_vector=setup_data.output_vector; output_vector.clear();
  3075. for(size_t i=0;i<nodes_in .size();i++) input_vector.push_back(&((FMMData*)((FMMNode*)nodes_in [i])->FMMData())->dnward_equiv);
  3076. for(size_t i=0;i<nodes_out.size();i++) output_vector.push_back(&((FMMData*)((FMMNode*)nodes_out[i])->FMMData())->dnward_equiv);
  3077. SetupInterac(setup_data,device);
  3078. }
  3079. template <class FMMNode>
  3080. void FMM_Pts<FMMNode>::Down2Down (SetupData<Real_t>& setup_data, bool device){
  3081. if(!this->MultipoleOrder()) return;
  3082. //Add Down2Down contribution.
  3083. EvalList(setup_data, device);
  3084. }
  3085. template <class FMMNode>
  3086. void FMM_Pts<FMMNode>::PtSetup(SetupData<Real_t>& setup_data, void* data_){
  3087. struct PackedData{
  3088. size_t len;
  3089. Matrix<Real_t>* ptr;
  3090. Vector<size_t> cnt;
  3091. Vector<size_t> dsp;
  3092. };
  3093. struct InteracData{
  3094. Vector<size_t> in_node;
  3095. Vector<size_t> scal_idx;
  3096. Vector<Real_t> coord_shift;
  3097. Vector<size_t> interac_cnt;
  3098. Vector<size_t> interac_dsp;
  3099. Vector<size_t> interac_cst;
  3100. Vector<Real_t> scal[4*MAX_DEPTH];
  3101. Matrix<Real_t> M[4];
  3102. };
  3103. struct ptSetupData{
  3104. int level;
  3105. const Kernel<Real_t>* kernel;
  3106. PackedData src_coord; // Src coord
  3107. PackedData src_value; // Src density
  3108. PackedData srf_coord; // Srf coord
  3109. PackedData srf_value; // Srf density
  3110. PackedData trg_coord; // Trg coord
  3111. PackedData trg_value; // Trg potential
  3112. InteracData interac_data;
  3113. };
  3114. ptSetupData& data=*(ptSetupData*)data_;
  3115. if(data.interac_data.interac_cnt.Dim()){ // Set data.interac_data.interac_cst
  3116. InteracData& intdata=data.interac_data;
  3117. Vector<size_t> cnt;
  3118. Vector<size_t>& dsp=intdata.interac_cst;
  3119. cnt.ReInit(intdata.interac_cnt.Dim());
  3120. dsp.ReInit(intdata.interac_dsp.Dim());
  3121. #pragma omp parallel for
  3122. for(size_t trg=0;trg<cnt.Dim();trg++){
  3123. size_t trg_cnt=data.trg_coord.cnt[trg];
  3124. cnt[trg]=0;
  3125. for(size_t i=0;i<intdata.interac_cnt[trg];i++){
  3126. size_t int_id=intdata.interac_dsp[trg]+i;
  3127. size_t src=intdata.in_node[int_id];
  3128. size_t src_cnt=data.src_coord.cnt[src];
  3129. size_t srf_cnt=data.srf_coord.cnt[src];
  3130. cnt[trg]+=(src_cnt+srf_cnt)*trg_cnt;
  3131. }
  3132. }
  3133. dsp[0]=cnt[0];
  3134. omp_par::scan(&cnt[0],&dsp[0],dsp.Dim());
  3135. }
  3136. { // pack data
  3137. struct PackedSetupData{
  3138. size_t size;
  3139. int level;
  3140. const Kernel<Real_t>* kernel;
  3141. Matrix<Real_t>* src_coord; // Src coord
  3142. Matrix<Real_t>* src_value; // Src density
  3143. Matrix<Real_t>* srf_coord; // Srf coord
  3144. Matrix<Real_t>* srf_value; // Srf density
  3145. Matrix<Real_t>* trg_coord; // Trg coord
  3146. Matrix<Real_t>* trg_value; // Trg potential
  3147. size_t src_coord_cnt_size; size_t src_coord_cnt_offset;
  3148. size_t src_coord_dsp_size; size_t src_coord_dsp_offset;
  3149. size_t src_value_cnt_size; size_t src_value_cnt_offset;
  3150. size_t src_value_dsp_size; size_t src_value_dsp_offset;
  3151. size_t srf_coord_cnt_size; size_t srf_coord_cnt_offset;
  3152. size_t srf_coord_dsp_size; size_t srf_coord_dsp_offset;
  3153. size_t srf_value_cnt_size; size_t srf_value_cnt_offset;
  3154. size_t srf_value_dsp_size; size_t srf_value_dsp_offset;
  3155. size_t trg_coord_cnt_size; size_t trg_coord_cnt_offset;
  3156. size_t trg_coord_dsp_size; size_t trg_coord_dsp_offset;
  3157. size_t trg_value_cnt_size; size_t trg_value_cnt_offset;
  3158. size_t trg_value_dsp_size; size_t trg_value_dsp_offset;
  3159. // interac_data
  3160. size_t in_node_size; size_t in_node_offset;
  3161. size_t scal_idx_size; size_t scal_idx_offset;
  3162. size_t coord_shift_size; size_t coord_shift_offset;
  3163. size_t interac_cnt_size; size_t interac_cnt_offset;
  3164. size_t interac_dsp_size; size_t interac_dsp_offset;
  3165. size_t interac_cst_size; size_t interac_cst_offset;
  3166. size_t scal_dim[4*MAX_DEPTH]; size_t scal_offset[4*MAX_DEPTH];
  3167. size_t Mdim[4][2]; size_t M_offset[4];
  3168. };
  3169. PackedSetupData pkd_data;
  3170. { // Set pkd_data
  3171. size_t offset=mem::align_ptr(sizeof(PackedSetupData));
  3172. pkd_data. level=data. level;
  3173. pkd_data.kernel=data.kernel;
  3174. pkd_data.src_coord=data.src_coord.ptr;
  3175. pkd_data.src_value=data.src_value.ptr;
  3176. pkd_data.srf_coord=data.srf_coord.ptr;
  3177. pkd_data.srf_value=data.srf_value.ptr;
  3178. pkd_data.trg_coord=data.trg_coord.ptr;
  3179. pkd_data.trg_value=data.trg_value.ptr;
  3180. pkd_data.src_coord_cnt_offset=offset; pkd_data.src_coord_cnt_size=data.src_coord.cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.src_coord_cnt_size);
  3181. pkd_data.src_coord_dsp_offset=offset; pkd_data.src_coord_dsp_size=data.src_coord.dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.src_coord_dsp_size);
  3182. pkd_data.src_value_cnt_offset=offset; pkd_data.src_value_cnt_size=data.src_value.cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.src_value_cnt_size);
  3183. pkd_data.src_value_dsp_offset=offset; pkd_data.src_value_dsp_size=data.src_value.dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.src_value_dsp_size);
  3184. pkd_data.srf_coord_cnt_offset=offset; pkd_data.srf_coord_cnt_size=data.srf_coord.cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.srf_coord_cnt_size);
  3185. pkd_data.srf_coord_dsp_offset=offset; pkd_data.srf_coord_dsp_size=data.srf_coord.dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.srf_coord_dsp_size);
  3186. pkd_data.srf_value_cnt_offset=offset; pkd_data.srf_value_cnt_size=data.srf_value.cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.srf_value_cnt_size);
  3187. pkd_data.srf_value_dsp_offset=offset; pkd_data.srf_value_dsp_size=data.srf_value.dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.srf_value_dsp_size);
  3188. pkd_data.trg_coord_cnt_offset=offset; pkd_data.trg_coord_cnt_size=data.trg_coord.cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.trg_coord_cnt_size);
  3189. pkd_data.trg_coord_dsp_offset=offset; pkd_data.trg_coord_dsp_size=data.trg_coord.dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.trg_coord_dsp_size);
  3190. pkd_data.trg_value_cnt_offset=offset; pkd_data.trg_value_cnt_size=data.trg_value.cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.trg_value_cnt_size);
  3191. pkd_data.trg_value_dsp_offset=offset; pkd_data.trg_value_dsp_size=data.trg_value.dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.trg_value_dsp_size);
  3192. InteracData& intdata=data.interac_data;
  3193. pkd_data. in_node_offset=offset; pkd_data. in_node_size=intdata. in_node.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data. in_node_size);
  3194. pkd_data. scal_idx_offset=offset; pkd_data. scal_idx_size=intdata. scal_idx.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data. scal_idx_size);
  3195. pkd_data.coord_shift_offset=offset; pkd_data.coord_shift_size=intdata.coord_shift.Dim(); offset+=mem::align_ptr(sizeof(Real_t)*pkd_data.coord_shift_size);
  3196. pkd_data.interac_cnt_offset=offset; pkd_data.interac_cnt_size=intdata.interac_cnt.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.interac_cnt_size);
  3197. pkd_data.interac_dsp_offset=offset; pkd_data.interac_dsp_size=intdata.interac_dsp.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.interac_dsp_size);
  3198. pkd_data.interac_cst_offset=offset; pkd_data.interac_cst_size=intdata.interac_cst.Dim(); offset+=mem::align_ptr(sizeof(size_t)*pkd_data.interac_cst_size);
  3199. for(size_t i=0;i<4*MAX_DEPTH;i++){
  3200. pkd_data.scal_offset[i]=offset; pkd_data.scal_dim[i]=intdata.scal[i].Dim(); offset+=mem::align_ptr(sizeof(Real_t)*pkd_data.scal_dim[i]);
  3201. }
  3202. for(size_t i=0;i<4;i++){
  3203. size_t& Mdim0=pkd_data.Mdim[i][0];
  3204. size_t& Mdim1=pkd_data.Mdim[i][1];
  3205. pkd_data.M_offset[i]=offset; Mdim0=intdata.M[i].Dim(0); Mdim1=intdata.M[i].Dim(1); offset+=mem::align_ptr(sizeof(Real_t)*Mdim0*Mdim1);
  3206. }
  3207. pkd_data.size=offset;
  3208. }
  3209. { // Set setup_data.interac_data
  3210. Matrix<char>& buff=setup_data.interac_data;
  3211. if(pkd_data.size>buff.Dim(0)*buff.Dim(1)){
  3212. buff.ReInit(1,pkd_data.size);
  3213. }
  3214. ((PackedSetupData*)buff[0])[0]=pkd_data;
  3215. if(pkd_data.src_coord_cnt_size) memcpy(&buff[0][pkd_data.src_coord_cnt_offset], &data.src_coord.cnt[0], pkd_data.src_coord_cnt_size*sizeof(size_t));
  3216. if(pkd_data.src_coord_dsp_size) memcpy(&buff[0][pkd_data.src_coord_dsp_offset], &data.src_coord.dsp[0], pkd_data.src_coord_dsp_size*sizeof(size_t));
  3217. if(pkd_data.src_value_cnt_size) memcpy(&buff[0][pkd_data.src_value_cnt_offset], &data.src_value.cnt[0], pkd_data.src_value_cnt_size*sizeof(size_t));
  3218. if(pkd_data.src_value_dsp_size) memcpy(&buff[0][pkd_data.src_value_dsp_offset], &data.src_value.dsp[0], pkd_data.src_value_dsp_size*sizeof(size_t));
  3219. if(pkd_data.srf_coord_cnt_size) memcpy(&buff[0][pkd_data.srf_coord_cnt_offset], &data.srf_coord.cnt[0], pkd_data.srf_coord_cnt_size*sizeof(size_t));
  3220. if(pkd_data.srf_coord_dsp_size) memcpy(&buff[0][pkd_data.srf_coord_dsp_offset], &data.srf_coord.dsp[0], pkd_data.srf_coord_dsp_size*sizeof(size_t));
  3221. if(pkd_data.srf_value_cnt_size) memcpy(&buff[0][pkd_data.srf_value_cnt_offset], &data.srf_value.cnt[0], pkd_data.srf_value_cnt_size*sizeof(size_t));
  3222. if(pkd_data.srf_value_dsp_size) memcpy(&buff[0][pkd_data.srf_value_dsp_offset], &data.srf_value.dsp[0], pkd_data.srf_value_dsp_size*sizeof(size_t));
  3223. if(pkd_data.trg_coord_cnt_size) memcpy(&buff[0][pkd_data.trg_coord_cnt_offset], &data.trg_coord.cnt[0], pkd_data.trg_coord_cnt_size*sizeof(size_t));
  3224. if(pkd_data.trg_coord_dsp_size) memcpy(&buff[0][pkd_data.trg_coord_dsp_offset], &data.trg_coord.dsp[0], pkd_data.trg_coord_dsp_size*sizeof(size_t));
  3225. if(pkd_data.trg_value_cnt_size) memcpy(&buff[0][pkd_data.trg_value_cnt_offset], &data.trg_value.cnt[0], pkd_data.trg_value_cnt_size*sizeof(size_t));
  3226. if(pkd_data.trg_value_dsp_size) memcpy(&buff[0][pkd_data.trg_value_dsp_offset], &data.trg_value.dsp[0], pkd_data.trg_value_dsp_size*sizeof(size_t));
  3227. InteracData& intdata=data.interac_data;
  3228. if(pkd_data. in_node_size) memcpy(&buff[0][pkd_data. in_node_offset], &intdata. in_node[0], pkd_data. in_node_size*sizeof(size_t));
  3229. if(pkd_data. scal_idx_size) memcpy(&buff[0][pkd_data. scal_idx_offset], &intdata. scal_idx[0], pkd_data. scal_idx_size*sizeof(size_t));
  3230. if(pkd_data.coord_shift_size) memcpy(&buff[0][pkd_data.coord_shift_offset], &intdata.coord_shift[0], pkd_data.coord_shift_size*sizeof(Real_t));
  3231. if(pkd_data.interac_cnt_size) memcpy(&buff[0][pkd_data.interac_cnt_offset], &intdata.interac_cnt[0], pkd_data.interac_cnt_size*sizeof(size_t));
  3232. if(pkd_data.interac_dsp_size) memcpy(&buff[0][pkd_data.interac_dsp_offset], &intdata.interac_dsp[0], pkd_data.interac_dsp_size*sizeof(size_t));
  3233. if(pkd_data.interac_cst_size) memcpy(&buff[0][pkd_data.interac_cst_offset], &intdata.interac_cst[0], pkd_data.interac_cst_size*sizeof(size_t));
  3234. for(size_t i=0;i<4*MAX_DEPTH;i++){
  3235. if(intdata.scal[i].Dim()) memcpy(&buff[0][pkd_data.scal_offset[i]], &intdata.scal[i][0], intdata.scal[i].Dim()*sizeof(Real_t));
  3236. }
  3237. for(size_t i=0;i<4;i++){
  3238. if(intdata.M[i].Dim(0)*intdata.M[i].Dim(1)) memcpy(&buff[0][pkd_data.M_offset[i]], &intdata.M[i][0][0], intdata.M[i].Dim(0)*intdata.M[i].Dim(1)*sizeof(Real_t));
  3239. }
  3240. }
  3241. }
  3242. { // Resize device buffer
  3243. size_t n=setup_data.output_data->Dim(0)*setup_data.output_data->Dim(1)*sizeof(Real_t);
  3244. if(this->dev_buffer.Dim()<n) this->dev_buffer.ReInit(n);
  3245. }
  3246. }
  3247. template <class FMMNode>
  3248. template <int SYNC>
  3249. void FMM_Pts<FMMNode>::EvalListPts(SetupData<Real_t>& setup_data, bool device){
  3250. if(setup_data.kernel->ker_dim[0]*setup_data.kernel->ker_dim[1]==0) return;
  3251. if(setup_data.interac_data.Dim(0)==0 || setup_data.interac_data.Dim(1)==0){
  3252. Profile::Tic("Host2Device",&this->comm,false,25);
  3253. Profile::Toc();
  3254. Profile::Tic("DeviceComp",&this->comm,false,20);
  3255. Profile::Toc();
  3256. return;
  3257. }
  3258. bool have_gpu=false;
  3259. #if defined(PVFMM_HAVE_CUDA)
  3260. have_gpu=true;
  3261. #endif
  3262. Profile::Tic("Host2Device",&this->comm,false,25);
  3263. typename Vector<char>::Device dev_buff;
  3264. typename Matrix<char>::Device interac_data;
  3265. typename Matrix<Real_t>::Device coord_data;
  3266. typename Matrix<Real_t>::Device input_data;
  3267. typename Matrix<Real_t>::Device output_data;
  3268. size_t ptr_single_layer_kernel=(size_t)NULL;
  3269. size_t ptr_double_layer_kernel=(size_t)NULL;
  3270. if(device && !have_gpu){
  3271. dev_buff = this-> dev_buffer. AllocDevice(false);
  3272. interac_data= setup_data.interac_data. AllocDevice(false);
  3273. if(setup_data. coord_data!=NULL) coord_data = setup_data. coord_data->AllocDevice(false);
  3274. if(setup_data. input_data!=NULL) input_data = setup_data. input_data->AllocDevice(false);
  3275. if(setup_data. output_data!=NULL) output_data = setup_data. output_data->AllocDevice(false);
  3276. ptr_single_layer_kernel=setup_data.kernel->dev_ker_poten;
  3277. ptr_double_layer_kernel=setup_data.kernel->dev_dbl_layer_poten;
  3278. }else{
  3279. dev_buff = this-> dev_buffer;
  3280. interac_data= setup_data.interac_data;
  3281. if(setup_data. coord_data!=NULL) coord_data =*setup_data. coord_data;
  3282. if(setup_data. input_data!=NULL) input_data =*setup_data. input_data;
  3283. if(setup_data. output_data!=NULL) output_data =*setup_data. output_data;
  3284. ptr_single_layer_kernel=(size_t)setup_data.kernel->ker_poten;
  3285. ptr_double_layer_kernel=(size_t)setup_data.kernel->dbl_layer_poten;
  3286. }
  3287. Profile::Toc();
  3288. Profile::Tic("DeviceComp",&this->comm,false,20);
  3289. int lock_idx=-1;
  3290. int wait_lock_idx=-1;
  3291. if(device) wait_lock_idx=MIC_Lock::curr_lock();
  3292. if(device) lock_idx=MIC_Lock::get_lock();
  3293. #ifdef __INTEL_OFFLOAD
  3294. #pragma offload if(device) target(mic:0) signal(&MIC_Lock::lock_vec[device?lock_idx:0])
  3295. #endif
  3296. { // Offloaded computation.
  3297. struct PackedData{
  3298. size_t len;
  3299. Matrix<Real_t>* ptr;
  3300. Vector<size_t> cnt;
  3301. Vector<size_t> dsp;
  3302. };
  3303. struct InteracData{
  3304. Vector<size_t> in_node;
  3305. Vector<size_t> scal_idx;
  3306. Vector<Real_t> coord_shift;
  3307. Vector<size_t> interac_cnt;
  3308. Vector<size_t> interac_dsp;
  3309. Vector<size_t> interac_cst;
  3310. Vector<Real_t> scal[4*MAX_DEPTH];
  3311. Matrix<Real_t> M[4];
  3312. };
  3313. struct ptSetupData{
  3314. int level;
  3315. const Kernel<Real_t>* kernel;
  3316. PackedData src_coord; // Src coord
  3317. PackedData src_value; // Src density
  3318. PackedData srf_coord; // Srf coord
  3319. PackedData srf_value; // Srf density
  3320. PackedData trg_coord; // Trg coord
  3321. PackedData trg_value; // Trg potential
  3322. InteracData interac_data;
  3323. };
  3324. ptSetupData data;
  3325. { // Initialize data
  3326. struct PackedSetupData{
  3327. size_t size;
  3328. int level;
  3329. const Kernel<Real_t>* kernel;
  3330. Matrix<Real_t>* src_coord; // Src coord
  3331. Matrix<Real_t>* src_value; // Src density
  3332. Matrix<Real_t>* srf_coord; // Srf coord
  3333. Matrix<Real_t>* srf_value; // Srf density
  3334. Matrix<Real_t>* trg_coord; // Trg coord
  3335. Matrix<Real_t>* trg_value; // Trg potential
  3336. size_t src_coord_cnt_size; size_t src_coord_cnt_offset;
  3337. size_t src_coord_dsp_size; size_t src_coord_dsp_offset;
  3338. size_t src_value_cnt_size; size_t src_value_cnt_offset;
  3339. size_t src_value_dsp_size; size_t src_value_dsp_offset;
  3340. size_t srf_coord_cnt_size; size_t srf_coord_cnt_offset;
  3341. size_t srf_coord_dsp_size; size_t srf_coord_dsp_offset;
  3342. size_t srf_value_cnt_size; size_t srf_value_cnt_offset;
  3343. size_t srf_value_dsp_size; size_t srf_value_dsp_offset;
  3344. size_t trg_coord_cnt_size; size_t trg_coord_cnt_offset;
  3345. size_t trg_coord_dsp_size; size_t trg_coord_dsp_offset;
  3346. size_t trg_value_cnt_size; size_t trg_value_cnt_offset;
  3347. size_t trg_value_dsp_size; size_t trg_value_dsp_offset;
  3348. // interac_data
  3349. size_t in_node_size; size_t in_node_offset;
  3350. size_t scal_idx_size; size_t scal_idx_offset;
  3351. size_t coord_shift_size; size_t coord_shift_offset;
  3352. size_t interac_cnt_size; size_t interac_cnt_offset;
  3353. size_t interac_dsp_size; size_t interac_dsp_offset;
  3354. size_t interac_cst_size; size_t interac_cst_offset;
  3355. size_t scal_dim[4*MAX_DEPTH]; size_t scal_offset[4*MAX_DEPTH];
  3356. size_t Mdim[4][2]; size_t M_offset[4];
  3357. };
  3358. typename Matrix<char>::Device& setupdata=interac_data;
  3359. PackedSetupData& pkd_data=*((PackedSetupData*)setupdata[0]);
  3360. data. level=pkd_data. level;
  3361. data.kernel=pkd_data.kernel;
  3362. data.src_coord.ptr=pkd_data.src_coord;
  3363. data.src_value.ptr=pkd_data.src_value;
  3364. data.srf_coord.ptr=pkd_data.srf_coord;
  3365. data.srf_value.ptr=pkd_data.srf_value;
  3366. data.trg_coord.ptr=pkd_data.trg_coord;
  3367. data.trg_value.ptr=pkd_data.trg_value;
  3368. data.src_coord.cnt.ReInit(pkd_data.src_coord_cnt_size, (size_t*)&setupdata[0][pkd_data.src_coord_cnt_offset], false);
  3369. data.src_coord.dsp.ReInit(pkd_data.src_coord_dsp_size, (size_t*)&setupdata[0][pkd_data.src_coord_dsp_offset], false);
  3370. data.src_value.cnt.ReInit(pkd_data.src_value_cnt_size, (size_t*)&setupdata[0][pkd_data.src_value_cnt_offset], false);
  3371. data.src_value.dsp.ReInit(pkd_data.src_value_dsp_size, (size_t*)&setupdata[0][pkd_data.src_value_dsp_offset], false);
  3372. data.srf_coord.cnt.ReInit(pkd_data.srf_coord_cnt_size, (size_t*)&setupdata[0][pkd_data.srf_coord_cnt_offset], false);
  3373. data.srf_coord.dsp.ReInit(pkd_data.srf_coord_dsp_size, (size_t*)&setupdata[0][pkd_data.srf_coord_dsp_offset], false);
  3374. data.srf_value.cnt.ReInit(pkd_data.srf_value_cnt_size, (size_t*)&setupdata[0][pkd_data.srf_value_cnt_offset], false);
  3375. data.srf_value.dsp.ReInit(pkd_data.srf_value_dsp_size, (size_t*)&setupdata[0][pkd_data.srf_value_dsp_offset], false);
  3376. data.trg_coord.cnt.ReInit(pkd_data.trg_coord_cnt_size, (size_t*)&setupdata[0][pkd_data.trg_coord_cnt_offset], false);
  3377. data.trg_coord.dsp.ReInit(pkd_data.trg_coord_dsp_size, (size_t*)&setupdata[0][pkd_data.trg_coord_dsp_offset], false);
  3378. data.trg_value.cnt.ReInit(pkd_data.trg_value_cnt_size, (size_t*)&setupdata[0][pkd_data.trg_value_cnt_offset], false);
  3379. data.trg_value.dsp.ReInit(pkd_data.trg_value_dsp_size, (size_t*)&setupdata[0][pkd_data.trg_value_dsp_offset], false);
  3380. InteracData& intdata=data.interac_data;
  3381. intdata. in_node.ReInit(pkd_data. in_node_size, (size_t*)&setupdata[0][pkd_data. in_node_offset],false);
  3382. intdata. scal_idx.ReInit(pkd_data. scal_idx_size, (size_t*)&setupdata[0][pkd_data. scal_idx_offset],false);
  3383. intdata.coord_shift.ReInit(pkd_data.coord_shift_size, (Real_t*)&setupdata[0][pkd_data.coord_shift_offset],false);
  3384. intdata.interac_cnt.ReInit(pkd_data.interac_cnt_size, (size_t*)&setupdata[0][pkd_data.interac_cnt_offset],false);
  3385. intdata.interac_dsp.ReInit(pkd_data.interac_dsp_size, (size_t*)&setupdata[0][pkd_data.interac_dsp_offset],false);
  3386. intdata.interac_cst.ReInit(pkd_data.interac_cst_size, (size_t*)&setupdata[0][pkd_data.interac_cst_offset],false);
  3387. for(size_t i=0;i<4*MAX_DEPTH;i++){
  3388. intdata.scal[i].ReInit(pkd_data.scal_dim[i], (Real_t*)&setupdata[0][pkd_data.scal_offset[i]],false);
  3389. }
  3390. for(size_t i=0;i<4;i++){
  3391. intdata.M[i].ReInit(pkd_data.Mdim[i][0], pkd_data.Mdim[i][1], (Real_t*)&setupdata[0][pkd_data.M_offset[i]],false);
  3392. }
  3393. }
  3394. if(device) MIC_Lock::wait_lock(wait_lock_idx);
  3395. { // Compute interactions
  3396. InteracData& intdata=data.interac_data;
  3397. typename Kernel<Real_t>::Ker_t single_layer_kernel=(typename Kernel<Real_t>::Ker_t)ptr_single_layer_kernel;
  3398. typename Kernel<Real_t>::Ker_t double_layer_kernel=(typename Kernel<Real_t>::Ker_t)ptr_double_layer_kernel;
  3399. int omp_p=omp_get_max_threads();
  3400. #pragma omp parallel for
  3401. for(size_t tid=0;tid<omp_p;tid++){
  3402. Matrix<Real_t> src_coord, src_value;
  3403. Matrix<Real_t> srf_coord, srf_value;
  3404. Matrix<Real_t> trg_coord, trg_value;
  3405. Vector<Real_t> buff;
  3406. { // init buff
  3407. size_t thread_buff_size=dev_buff.dim/sizeof(Real_t)/omp_p;
  3408. buff.ReInit(thread_buff_size, (Real_t*)&dev_buff[tid*thread_buff_size*sizeof(Real_t)], false);
  3409. }
  3410. size_t vcnt=0;
  3411. std::vector<Matrix<Real_t> > vbuff(6);
  3412. { // init vbuff[0:5]
  3413. size_t vdim_=0, vdim[6];
  3414. for(size_t indx=0;indx<6;indx++){
  3415. vdim[indx]=0;
  3416. switch(indx){
  3417. case 0:
  3418. vdim[indx]=intdata.M[0].Dim(0); break;
  3419. case 1:
  3420. assert(intdata.M[0].Dim(1)==intdata.M[1].Dim(0));
  3421. vdim[indx]=intdata.M[0].Dim(1); break;
  3422. case 2:
  3423. vdim[indx]=intdata.M[1].Dim(1); break;
  3424. case 3:
  3425. vdim[indx]=intdata.M[2].Dim(0); break;
  3426. case 4:
  3427. assert(intdata.M[2].Dim(1)==intdata.M[3].Dim(0));
  3428. vdim[indx]=intdata.M[2].Dim(1); break;
  3429. case 5:
  3430. vdim[indx]=intdata.M[3].Dim(1); break;
  3431. default:
  3432. vdim[indx]=0; break;
  3433. }
  3434. vdim_+=vdim[indx];
  3435. }
  3436. if(vdim_){
  3437. vcnt=buff.Dim()/vdim_/2;
  3438. assert(vcnt>0); // Thread buffer is too small
  3439. }
  3440. for(size_t indx=0;indx<6;indx++){ // init vbuff[0:5]
  3441. vbuff[indx].ReInit(vcnt,vdim[indx],&buff[0],false);
  3442. buff.ReInit(buff.Dim()-vdim[indx]*vcnt, &buff[vdim[indx]*vcnt], false);
  3443. }
  3444. }
  3445. size_t trg_a=0, trg_b=0;
  3446. if(intdata.interac_cst.Dim()){ // Determine trg_a, trg_b
  3447. //trg_a=((tid+0)*intdata.interac_cnt.Dim())/omp_p;
  3448. //trg_b=((tid+1)*intdata.interac_cnt.Dim())/omp_p;
  3449. Vector<size_t>& interac_cst=intdata.interac_cst;
  3450. size_t cost=interac_cst[interac_cst.Dim()-1];
  3451. trg_a=std::lower_bound(&interac_cst[0],&interac_cst[interac_cst.Dim()-1],(cost*(tid+0))/omp_p)-&interac_cst[0]+1;
  3452. trg_b=std::lower_bound(&interac_cst[0],&interac_cst[interac_cst.Dim()-1],(cost*(tid+1))/omp_p)-&interac_cst[0]+1;
  3453. if(tid==omp_p-1) trg_b=interac_cst.Dim();
  3454. if(tid==0) trg_a=0;
  3455. }
  3456. for(size_t trg0=trg_a;trg0<trg_b;){
  3457. size_t trg1_max=1;
  3458. if(vcnt){ // Find trg1_max
  3459. size_t interac_cnt=intdata.interac_cnt[trg0];
  3460. while(trg0+trg1_max<trg_b){
  3461. interac_cnt+=intdata.interac_cnt[trg0+trg1_max];
  3462. if(interac_cnt>vcnt){
  3463. interac_cnt-=intdata.interac_cnt[trg0+trg1_max];
  3464. break;
  3465. }
  3466. trg1_max++;
  3467. }
  3468. assert(interac_cnt<=vcnt);
  3469. for(size_t k=0;k<6;k++){
  3470. if(vbuff[k].Dim(0)*vbuff[k].Dim(1)){
  3471. vbuff[k].ReInit(interac_cnt,vbuff[k].Dim(1),vbuff[k][0],false);
  3472. }
  3473. }
  3474. }else{
  3475. trg1_max=trg_b-trg0;
  3476. }
  3477. if(intdata.M[0].Dim(0) && intdata.M[0].Dim(1) && intdata.M[1].Dim(0) && intdata.M[1].Dim(1)){ // src mat-vec
  3478. size_t interac_idx=0;
  3479. for(size_t trg1=0;trg1<trg1_max;trg1++){ // Copy src_value to vbuff[0]
  3480. size_t trg=trg0+trg1;
  3481. for(size_t i=0;i<intdata.interac_cnt[trg];i++){
  3482. size_t int_id=intdata.interac_dsp[trg]+i;
  3483. size_t src=intdata.in_node[int_id];
  3484. src_value.ReInit(1, data.src_value.cnt[src], &data.src_value.ptr[0][0][data.src_value.dsp[src]], false);
  3485. { // Copy src_value to vbuff[0]
  3486. size_t vdim=vbuff[0].Dim(1);
  3487. assert(src_value.Dim(1)==vdim);
  3488. for(size_t j=0;j<vdim;j++) vbuff[0][interac_idx][j]=src_value[0][j];
  3489. }
  3490. size_t scal_idx=intdata.scal_idx[int_id];
  3491. { // scaling
  3492. Matrix<Real_t>& vec=vbuff[0];
  3493. Vector<Real_t>& scal=intdata.scal[scal_idx*4+0];
  3494. size_t scal_dim=scal.Dim();
  3495. if(scal_dim){
  3496. size_t vdim=vec.Dim(1);
  3497. for(size_t j=0;j<vdim;j+=scal_dim){
  3498. for(size_t k=0;k<scal_dim;k++){
  3499. vec[interac_idx][j+k]*=scal[k];
  3500. }
  3501. }
  3502. }
  3503. }
  3504. interac_idx++;
  3505. }
  3506. }
  3507. Matrix<Real_t>::GEMM(vbuff[1],vbuff[0],intdata.M[0]);
  3508. Matrix<Real_t>::GEMM(vbuff[2],vbuff[1],intdata.M[1]);
  3509. interac_idx=0;
  3510. for(size_t trg1=0;trg1<trg1_max;trg1++){
  3511. size_t trg=trg0+trg1;
  3512. for(size_t i=0;i<intdata.interac_cnt[trg];i++){
  3513. size_t int_id=intdata.interac_dsp[trg]+i;
  3514. size_t scal_idx=intdata.scal_idx[int_id];
  3515. { // scaling
  3516. Matrix<Real_t>& vec=vbuff[2];
  3517. Vector<Real_t>& scal=intdata.scal[scal_idx*4+1];
  3518. size_t scal_dim=scal.Dim();
  3519. if(scal_dim){
  3520. size_t vdim=vec.Dim(1);
  3521. for(size_t j=0;j<vdim;j+=scal_dim){
  3522. for(size_t k=0;k<scal_dim;k++){
  3523. vec[interac_idx][j+k]*=scal[k];
  3524. }
  3525. }
  3526. }
  3527. }
  3528. interac_idx++;
  3529. }
  3530. }
  3531. }
  3532. if(intdata.M[2].Dim(0) && intdata.M[2].Dim(1) && intdata.M[3].Dim(0) && intdata.M[3].Dim(1)){ // init vbuff[3]
  3533. size_t vdim=vbuff[3].Dim(0)*vbuff[3].Dim(1);
  3534. for(size_t i=0;i<vdim;i++) vbuff[3][0][i]=0;
  3535. }
  3536. { // Evaluate kernel functions
  3537. size_t interac_idx=0;
  3538. for(size_t trg1=0;trg1<trg1_max;trg1++){
  3539. size_t trg=trg0+trg1;
  3540. trg_coord.ReInit(1, data.trg_coord.cnt[trg], &data.trg_coord.ptr[0][0][data.trg_coord.dsp[trg]], false);
  3541. trg_value.ReInit(1, data.trg_value.cnt[trg], &data.trg_value.ptr[0][0][data.trg_value.dsp[trg]], false);
  3542. for(size_t i=0;i<intdata.interac_cnt[trg];i++){
  3543. size_t int_id=intdata.interac_dsp[trg]+i;
  3544. size_t src=intdata.in_node[int_id];
  3545. src_coord.ReInit(1, data.src_coord.cnt[src], &data.src_coord.ptr[0][0][data.src_coord.dsp[src]], false);
  3546. src_value.ReInit(1, data.src_value.cnt[src], &data.src_value.ptr[0][0][data.src_value.dsp[src]], false);
  3547. srf_coord.ReInit(1, data.srf_coord.cnt[src], &data.srf_coord.ptr[0][0][data.srf_coord.dsp[src]], false);
  3548. srf_value.ReInit(1, data.srf_value.cnt[src], &data.srf_value.ptr[0][0][data.srf_value.dsp[src]], false);
  3549. Real_t* vbuff2_ptr=(vbuff[2].Dim(0)*vbuff[2].Dim(1)?vbuff[2][interac_idx]:src_value[0]);
  3550. Real_t* vbuff3_ptr=(vbuff[3].Dim(0)*vbuff[3].Dim(1)?vbuff[3][interac_idx]:trg_value[0]);
  3551. { // coord_shift
  3552. Real_t* shift=&intdata.coord_shift[int_id*COORD_DIM];
  3553. if(shift[0]!=0 || shift[1]!=0 || shift[2]!=0){
  3554. size_t vdim=src_coord.Dim(1);
  3555. Vector<Real_t> new_coord(vdim, &buff[0], false);
  3556. assert(buff.Dim()>=vdim); // Thread buffer is too small
  3557. //buff.ReInit(buff.Dim()-vdim, &buff[vdim], false);
  3558. for(size_t j=0;j<vdim;j+=COORD_DIM){
  3559. for(size_t k=0;k<COORD_DIM;k++){
  3560. new_coord[j+k]=src_coord[0][j+k]+shift[k];
  3561. }
  3562. }
  3563. src_coord.ReInit(1, vdim, &new_coord[0], false);
  3564. }
  3565. }
  3566. if(src_coord.Dim(1)){
  3567. assert(ptr_single_layer_kernel); // assert(Single-layer kernel is implemented)
  3568. single_layer_kernel(src_coord[0], src_coord.Dim(1)/COORD_DIM, vbuff2_ptr, 1,
  3569. trg_coord[0], trg_coord.Dim(1)/COORD_DIM, vbuff3_ptr, NULL);
  3570. }
  3571. if(srf_coord.Dim(1)){
  3572. assert(ptr_double_layer_kernel); // assert(Double-layer kernel is implemented)
  3573. double_layer_kernel(srf_coord[0], srf_coord.Dim(1)/COORD_DIM, srf_value[0], 1,
  3574. trg_coord[0], trg_coord.Dim(1)/COORD_DIM, trg_value[0], NULL);
  3575. }
  3576. interac_idx++;
  3577. }
  3578. }
  3579. }
  3580. if(intdata.M[2].Dim(0) && intdata.M[2].Dim(1) && intdata.M[3].Dim(0) && intdata.M[3].Dim(1)){ // trg mat-vec
  3581. size_t interac_idx=0;
  3582. for(size_t trg1=0;trg1<trg1_max;trg1++){
  3583. size_t trg=trg0+trg1;
  3584. for(size_t i=0;i<intdata.interac_cnt[trg];i++){
  3585. size_t int_id=intdata.interac_dsp[trg]+i;
  3586. size_t scal_idx=intdata.scal_idx[int_id];
  3587. { // scaling
  3588. Matrix<Real_t>& vec=vbuff[3];
  3589. Vector<Real_t>& scal=intdata.scal[scal_idx*4+2];
  3590. size_t scal_dim=scal.Dim();
  3591. if(scal_dim){
  3592. size_t vdim=vec.Dim(1);
  3593. for(size_t j=0;j<vdim;j+=scal_dim){
  3594. for(size_t k=0;k<scal_dim;k++){
  3595. vec[interac_idx][j+k]*=scal[k];
  3596. }
  3597. }
  3598. }
  3599. }
  3600. interac_idx++;
  3601. }
  3602. }
  3603. Matrix<Real_t>::GEMM(vbuff[4],vbuff[3],intdata.M[2]);
  3604. Matrix<Real_t>::GEMM(vbuff[5],vbuff[4],intdata.M[3]);
  3605. interac_idx=0;
  3606. for(size_t trg1=0;trg1<trg1_max;trg1++){
  3607. size_t trg=trg0+trg1;
  3608. trg_value.ReInit(1, data.trg_value.cnt[trg], &data.trg_value.ptr[0][0][data.trg_value.dsp[trg]], false);
  3609. for(size_t i=0;i<intdata.interac_cnt[trg];i++){
  3610. size_t int_id=intdata.interac_dsp[trg]+i;
  3611. size_t scal_idx=intdata.scal_idx[int_id];
  3612. { // scaling
  3613. Matrix<Real_t>& vec=vbuff[5];
  3614. Vector<Real_t>& scal=intdata.scal[scal_idx*4+3];
  3615. size_t scal_dim=scal.Dim();
  3616. if(scal_dim){
  3617. size_t vdim=vec.Dim(1);
  3618. for(size_t j=0;j<vdim;j+=scal_dim){
  3619. for(size_t k=0;k<scal_dim;k++){
  3620. vec[interac_idx][j+k]*=scal[k];
  3621. }
  3622. }
  3623. }
  3624. }
  3625. { // Add vbuff[5] to trg_value
  3626. size_t vdim=vbuff[5].Dim(1);
  3627. assert(trg_value.Dim(1)==vdim);
  3628. for(size_t i=0;i<vdim;i++) trg_value[0][i]+=vbuff[5][interac_idx][i];
  3629. }
  3630. interac_idx++;
  3631. }
  3632. }
  3633. }
  3634. trg0+=trg1_max;
  3635. }
  3636. }
  3637. }
  3638. if(device) MIC_Lock::release_lock(lock_idx);
  3639. }
  3640. #ifdef __INTEL_OFFLOAD
  3641. if(SYNC){
  3642. #pragma offload if(device) target(mic:0)
  3643. {if(device) MIC_Lock::wait_lock(lock_idx);}
  3644. }
  3645. #endif
  3646. Profile::Toc();
  3647. }
  3648. template <class FMMNode>
  3649. void FMM_Pts<FMMNode>::X_ListSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  3650. if(!this->MultipoleOrder()) return;
  3651. { // Set setup_data
  3652. setup_data. level=level;
  3653. setup_data.kernel=kernel->k_s2l;
  3654. setup_data. input_data=&buff[4];
  3655. setup_data.output_data=&buff[1];
  3656. setup_data. coord_data=&buff[6];
  3657. Vector<FMMNode_t*>& nodes_in =n_list[4];
  3658. Vector<FMMNode_t*>& nodes_out=n_list[1];
  3659. setup_data.nodes_in .clear();
  3660. setup_data.nodes_out.clear();
  3661. for(size_t i=0;i<nodes_in .Dim();i++) if((level==0 || level==-1) && (nodes_in [i]->src_coord.Dim() || nodes_in [i]->surf_coord.Dim()) && nodes_in [i]->IsLeaf ()) setup_data.nodes_in .push_back(nodes_in [i]);
  3662. for(size_t i=0;i<nodes_out.Dim();i++) if((level==0 || level==-1) && nodes_out[i]->pt_cnt[1] && !nodes_out[i]->IsGhost()) setup_data.nodes_out.push_back(nodes_out[i]);
  3663. }
  3664. struct PackedData{
  3665. size_t len;
  3666. Matrix<Real_t>* ptr;
  3667. Vector<size_t> cnt;
  3668. Vector<size_t> dsp;
  3669. };
  3670. struct InteracData{
  3671. Vector<size_t> in_node;
  3672. Vector<size_t> scal_idx;
  3673. Vector<Real_t> coord_shift;
  3674. Vector<size_t> interac_cnt;
  3675. Vector<size_t> interac_dsp;
  3676. Vector<size_t> interac_cst;
  3677. Vector<Real_t> scal[4*MAX_DEPTH];
  3678. Matrix<Real_t> M[4];
  3679. };
  3680. struct ptSetupData{
  3681. int level;
  3682. const Kernel<Real_t>* kernel;
  3683. PackedData src_coord; // Src coord
  3684. PackedData src_value; // Src density
  3685. PackedData srf_coord; // Srf coord
  3686. PackedData srf_value; // Srf density
  3687. PackedData trg_coord; // Trg coord
  3688. PackedData trg_value; // Trg potential
  3689. InteracData interac_data;
  3690. };
  3691. ptSetupData data;
  3692. data. level=setup_data. level;
  3693. data.kernel=setup_data.kernel;
  3694. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  3695. std::vector<void*>& nodes_out=setup_data.nodes_out;
  3696. { // Set src data
  3697. std::vector<void*>& nodes=nodes_in;
  3698. PackedData& coord=data.src_coord;
  3699. PackedData& value=data.src_value;
  3700. coord.ptr=setup_data. coord_data;
  3701. value.ptr=setup_data. input_data;
  3702. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  3703. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  3704. coord.cnt.ReInit(nodes.size());
  3705. coord.dsp.ReInit(nodes.size());
  3706. value.cnt.ReInit(nodes.size());
  3707. value.dsp.ReInit(nodes.size());
  3708. #pragma omp parallel for
  3709. for(size_t i=0;i<nodes.size();i++){
  3710. ((FMMNode_t*)nodes[i])->node_id=i;
  3711. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->src_coord;
  3712. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->src_value;
  3713. if(coord_vec.Dim()){
  3714. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  3715. assert(coord.dsp[i]<coord.len);
  3716. coord.cnt[i]=coord_vec.Dim();
  3717. }else{
  3718. coord.dsp[i]=0;
  3719. coord.cnt[i]=0;
  3720. }
  3721. if(value_vec.Dim()){
  3722. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  3723. assert(value.dsp[i]<value.len);
  3724. value.cnt[i]=value_vec.Dim();
  3725. }else{
  3726. value.dsp[i]=0;
  3727. value.cnt[i]=0;
  3728. }
  3729. }
  3730. }
  3731. { // Set srf data
  3732. std::vector<void*>& nodes=nodes_in;
  3733. PackedData& coord=data.srf_coord;
  3734. PackedData& value=data.srf_value;
  3735. coord.ptr=setup_data. coord_data;
  3736. value.ptr=setup_data. input_data;
  3737. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  3738. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  3739. coord.cnt.ReInit(nodes.size());
  3740. coord.dsp.ReInit(nodes.size());
  3741. value.cnt.ReInit(nodes.size());
  3742. value.dsp.ReInit(nodes.size());
  3743. #pragma omp parallel for
  3744. for(size_t i=0;i<nodes.size();i++){
  3745. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->surf_coord;
  3746. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->surf_value;
  3747. if(coord_vec.Dim()){
  3748. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  3749. assert(coord.dsp[i]<coord.len);
  3750. coord.cnt[i]=coord_vec.Dim();
  3751. }else{
  3752. coord.dsp[i]=0;
  3753. coord.cnt[i]=0;
  3754. }
  3755. if(value_vec.Dim()){
  3756. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  3757. assert(value.dsp[i]<value.len);
  3758. value.cnt[i]=value_vec.Dim();
  3759. }else{
  3760. value.dsp[i]=0;
  3761. value.cnt[i]=0;
  3762. }
  3763. }
  3764. }
  3765. { // Set trg data
  3766. std::vector<void*>& nodes=nodes_out;
  3767. PackedData& coord=data.trg_coord;
  3768. PackedData& value=data.trg_value;
  3769. coord.ptr=setup_data. coord_data;
  3770. value.ptr=setup_data.output_data;
  3771. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  3772. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  3773. coord.cnt.ReInit(nodes.size());
  3774. coord.dsp.ReInit(nodes.size());
  3775. value.cnt.ReInit(nodes.size());
  3776. value.dsp.ReInit(nodes.size());
  3777. #pragma omp parallel for
  3778. for(size_t i=0;i<nodes.size();i++){
  3779. Vector<Real_t>& coord_vec=tree->dnwd_check_surf[((FMMNode*)nodes[i])->Depth()];
  3780. Vector<Real_t>& value_vec=((FMMData*)((FMMNode*)nodes[i])->FMMData())->dnward_equiv;
  3781. if(coord_vec.Dim()){
  3782. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  3783. assert(coord.dsp[i]<coord.len);
  3784. coord.cnt[i]=coord_vec.Dim();
  3785. }else{
  3786. coord.dsp[i]=0;
  3787. coord.cnt[i]=0;
  3788. }
  3789. if(value_vec.Dim()){
  3790. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  3791. assert(value.dsp[i]<value.len);
  3792. value.cnt[i]=value_vec.Dim();
  3793. }else{
  3794. value.dsp[i]=0;
  3795. value.cnt[i]=0;
  3796. }
  3797. }
  3798. }
  3799. { // Set interac_data
  3800. int omp_p=omp_get_max_threads();
  3801. std::vector<std::vector<size_t> > in_node_(omp_p);
  3802. std::vector<std::vector<size_t> > scal_idx_(omp_p);
  3803. std::vector<std::vector<Real_t> > coord_shift_(omp_p);
  3804. std::vector<std::vector<size_t> > interac_cnt_(omp_p);
  3805. size_t m=this->MultipoleOrder();
  3806. size_t Nsrf=(6*(m-1)*(m-1)+2);
  3807. #pragma omp parallel for
  3808. for(size_t tid=0;tid<omp_p;tid++){
  3809. std::vector<size_t>& in_node =in_node_[tid] ;
  3810. std::vector<size_t>& scal_idx =scal_idx_[tid] ;
  3811. std::vector<Real_t>& coord_shift=coord_shift_[tid];
  3812. std::vector<size_t>& interac_cnt=interac_cnt_[tid] ;
  3813. size_t a=(nodes_out.size()*(tid+0))/omp_p;
  3814. size_t b=(nodes_out.size()*(tid+1))/omp_p;
  3815. for(size_t i=a;i<b;i++){
  3816. FMMNode_t* tnode=(FMMNode_t*)nodes_out[i];
  3817. if(tnode->IsLeaf() && tnode->pt_cnt[1]<=Nsrf){ // skip: handled in U-list
  3818. interac_cnt.push_back(0);
  3819. continue;
  3820. }
  3821. Real_t s=std::pow(0.5,tnode->Depth());
  3822. size_t interac_cnt_=0;
  3823. { // X_Type
  3824. Mat_Type type=X_Type;
  3825. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  3826. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  3827. FMMNode_t* snode=intlst[j];
  3828. size_t snode_id=snode->node_id;
  3829. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  3830. in_node.push_back(snode_id);
  3831. scal_idx.push_back(snode->Depth());
  3832. { // set coord_shift
  3833. const int* rel_coord=interac_list.RelativeCoord(type,j);
  3834. const Real_t* scoord=snode->Coord();
  3835. const Real_t* tcoord=tnode->Coord();
  3836. Real_t shift[COORD_DIM];
  3837. shift[0]=rel_coord[0]*0.5*s-(scoord[0]+1.0*s)+(0+0.5*s);
  3838. shift[1]=rel_coord[1]*0.5*s-(scoord[1]+1.0*s)+(0+0.5*s);
  3839. shift[2]=rel_coord[2]*0.5*s-(scoord[2]+1.0*s)+(0+0.5*s);
  3840. coord_shift.push_back(shift[0]);
  3841. coord_shift.push_back(shift[1]);
  3842. coord_shift.push_back(shift[2]);
  3843. }
  3844. interac_cnt_++;
  3845. }
  3846. }
  3847. interac_cnt.push_back(interac_cnt_);
  3848. }
  3849. }
  3850. { // Combine interac data
  3851. InteracData& interac_data=data.interac_data;
  3852. { // in_node
  3853. typedef size_t ElemType;
  3854. std::vector<std::vector<ElemType> >& vec_=in_node_;
  3855. pvfmm::Vector<ElemType>& vec=interac_data.in_node;
  3856. std::vector<size_t> vec_dsp(omp_p+1,0);
  3857. for(size_t tid=0;tid<omp_p;tid++){
  3858. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  3859. }
  3860. vec.ReInit(vec_dsp[omp_p]);
  3861. #pragma omp parallel for
  3862. for(size_t tid=0;tid<omp_p;tid++){
  3863. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  3864. }
  3865. }
  3866. { // scal_idx
  3867. typedef size_t ElemType;
  3868. std::vector<std::vector<ElemType> >& vec_=scal_idx_;
  3869. pvfmm::Vector<ElemType>& vec=interac_data.scal_idx;
  3870. std::vector<size_t> vec_dsp(omp_p+1,0);
  3871. for(size_t tid=0;tid<omp_p;tid++){
  3872. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  3873. }
  3874. vec.ReInit(vec_dsp[omp_p]);
  3875. #pragma omp parallel for
  3876. for(size_t tid=0;tid<omp_p;tid++){
  3877. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  3878. }
  3879. }
  3880. { // coord_shift
  3881. typedef Real_t ElemType;
  3882. std::vector<std::vector<ElemType> >& vec_=coord_shift_;
  3883. pvfmm::Vector<ElemType>& vec=interac_data.coord_shift;
  3884. std::vector<size_t> vec_dsp(omp_p+1,0);
  3885. for(size_t tid=0;tid<omp_p;tid++){
  3886. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  3887. }
  3888. vec.ReInit(vec_dsp[omp_p]);
  3889. #pragma omp parallel for
  3890. for(size_t tid=0;tid<omp_p;tid++){
  3891. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  3892. }
  3893. }
  3894. { // interac_cnt
  3895. typedef size_t ElemType;
  3896. std::vector<std::vector<ElemType> >& vec_=interac_cnt_;
  3897. pvfmm::Vector<ElemType>& vec=interac_data.interac_cnt;
  3898. std::vector<size_t> vec_dsp(omp_p+1,0);
  3899. for(size_t tid=0;tid<omp_p;tid++){
  3900. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  3901. }
  3902. vec.ReInit(vec_dsp[omp_p]);
  3903. #pragma omp parallel for
  3904. for(size_t tid=0;tid<omp_p;tid++){
  3905. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  3906. }
  3907. }
  3908. { // interac_dsp
  3909. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  3910. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  3911. dsp.ReInit(cnt.Dim()); if(dsp.Dim()) dsp[0]=0;
  3912. omp_par::scan(&cnt[0],&dsp[0],dsp.Dim());
  3913. }
  3914. }
  3915. }
  3916. PtSetup(setup_data, &data);
  3917. }
  3918. template <class FMMNode>
  3919. void FMM_Pts<FMMNode>::X_List (SetupData<Real_t>& setup_data, bool device){
  3920. if(!this->MultipoleOrder()) return;
  3921. //Add X_List contribution.
  3922. this->EvalListPts(setup_data, device);
  3923. }
  3924. template <class FMMNode>
  3925. void FMM_Pts<FMMNode>::W_ListSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  3926. if(!this->MultipoleOrder()) return;
  3927. { // Set setup_data
  3928. setup_data. level=level;
  3929. setup_data.kernel=kernel->k_m2t;
  3930. setup_data. input_data=&buff[0];
  3931. setup_data.output_data=&buff[5];
  3932. setup_data. coord_data=&buff[6];
  3933. Vector<FMMNode_t*>& nodes_in =n_list[0];
  3934. Vector<FMMNode_t*>& nodes_out=n_list[5];
  3935. setup_data.nodes_in .clear();
  3936. setup_data.nodes_out.clear();
  3937. for(size_t i=0;i<nodes_in .Dim();i++) if((level==0 || level==-1) && nodes_in [i]->pt_cnt[0] ) setup_data.nodes_in .push_back(nodes_in [i]);
  3938. for(size_t i=0;i<nodes_out.Dim();i++) if((level==0 || level==-1) && nodes_out[i]->trg_coord.Dim() && nodes_out[i]->IsLeaf() && !nodes_out[i]->IsGhost()) setup_data.nodes_out.push_back(nodes_out[i]);
  3939. }
  3940. struct PackedData{
  3941. size_t len;
  3942. Matrix<Real_t>* ptr;
  3943. Vector<size_t> cnt;
  3944. Vector<size_t> dsp;
  3945. };
  3946. struct InteracData{
  3947. Vector<size_t> in_node;
  3948. Vector<size_t> scal_idx;
  3949. Vector<Real_t> coord_shift;
  3950. Vector<size_t> interac_cnt;
  3951. Vector<size_t> interac_dsp;
  3952. Vector<size_t> interac_cst;
  3953. Vector<Real_t> scal[4*MAX_DEPTH];
  3954. Matrix<Real_t> M[4];
  3955. };
  3956. struct ptSetupData{
  3957. int level;
  3958. const Kernel<Real_t>* kernel;
  3959. PackedData src_coord; // Src coord
  3960. PackedData src_value; // Src density
  3961. PackedData srf_coord; // Srf coord
  3962. PackedData srf_value; // Srf density
  3963. PackedData trg_coord; // Trg coord
  3964. PackedData trg_value; // Trg potential
  3965. InteracData interac_data;
  3966. };
  3967. ptSetupData data;
  3968. data. level=setup_data. level;
  3969. data.kernel=setup_data.kernel;
  3970. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  3971. std::vector<void*>& nodes_out=setup_data.nodes_out;
  3972. { // Set src data
  3973. std::vector<void*>& nodes=nodes_in;
  3974. PackedData& coord=data.src_coord;
  3975. PackedData& value=data.src_value;
  3976. coord.ptr=setup_data. coord_data;
  3977. value.ptr=setup_data. input_data;
  3978. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  3979. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  3980. coord.cnt.ReInit(nodes.size());
  3981. coord.dsp.ReInit(nodes.size());
  3982. value.cnt.ReInit(nodes.size());
  3983. value.dsp.ReInit(nodes.size());
  3984. #pragma omp parallel for
  3985. for(size_t i=0;i<nodes.size();i++){
  3986. ((FMMNode_t*)nodes[i])->node_id=i;
  3987. Vector<Real_t>& coord_vec=tree->upwd_equiv_surf[((FMMNode*)nodes[i])->Depth()];
  3988. Vector<Real_t>& value_vec=((FMMData*)((FMMNode*)nodes[i])->FMMData())->upward_equiv;
  3989. if(coord_vec.Dim()){
  3990. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  3991. assert(coord.dsp[i]<coord.len);
  3992. coord.cnt[i]=coord_vec.Dim();
  3993. }else{
  3994. coord.dsp[i]=0;
  3995. coord.cnt[i]=0;
  3996. }
  3997. if(value_vec.Dim()){
  3998. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  3999. assert(value.dsp[i]<value.len);
  4000. value.cnt[i]=value_vec.Dim();
  4001. }else{
  4002. value.dsp[i]=0;
  4003. value.cnt[i]=0;
  4004. }
  4005. }
  4006. }
  4007. { // Set srf data
  4008. std::vector<void*>& nodes=nodes_in;
  4009. PackedData& coord=data.srf_coord;
  4010. PackedData& value=data.srf_value;
  4011. coord.ptr=setup_data. coord_data;
  4012. value.ptr=setup_data. input_data;
  4013. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4014. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4015. coord.cnt.ReInit(nodes.size());
  4016. coord.dsp.ReInit(nodes.size());
  4017. value.cnt.ReInit(nodes.size());
  4018. value.dsp.ReInit(nodes.size());
  4019. #pragma omp parallel for
  4020. for(size_t i=0;i<nodes.size();i++){
  4021. coord.dsp[i]=0;
  4022. coord.cnt[i]=0;
  4023. value.dsp[i]=0;
  4024. value.cnt[i]=0;
  4025. }
  4026. }
  4027. { // Set trg data
  4028. std::vector<void*>& nodes=nodes_out;
  4029. PackedData& coord=data.trg_coord;
  4030. PackedData& value=data.trg_value;
  4031. coord.ptr=setup_data. coord_data;
  4032. value.ptr=setup_data.output_data;
  4033. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4034. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4035. coord.cnt.ReInit(nodes.size());
  4036. coord.dsp.ReInit(nodes.size());
  4037. value.cnt.ReInit(nodes.size());
  4038. value.dsp.ReInit(nodes.size());
  4039. #pragma omp parallel for
  4040. for(size_t i=0;i<nodes.size();i++){
  4041. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->trg_coord;
  4042. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->trg_value;
  4043. if(coord_vec.Dim()){
  4044. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  4045. assert(coord.dsp[i]<coord.len);
  4046. coord.cnt[i]=coord_vec.Dim();
  4047. }else{
  4048. coord.dsp[i]=0;
  4049. coord.cnt[i]=0;
  4050. }
  4051. if(value_vec.Dim()){
  4052. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  4053. assert(value.dsp[i]<value.len);
  4054. value.cnt[i]=value_vec.Dim();
  4055. }else{
  4056. value.dsp[i]=0;
  4057. value.cnt[i]=0;
  4058. }
  4059. }
  4060. }
  4061. { // Set interac_data
  4062. int omp_p=omp_get_max_threads();
  4063. std::vector<std::vector<size_t> > in_node_(omp_p);
  4064. std::vector<std::vector<size_t> > scal_idx_(omp_p);
  4065. std::vector<std::vector<Real_t> > coord_shift_(omp_p);
  4066. std::vector<std::vector<size_t> > interac_cnt_(omp_p);
  4067. size_t m=this->MultipoleOrder();
  4068. size_t Nsrf=(6*(m-1)*(m-1)+2);
  4069. #pragma omp parallel for
  4070. for(size_t tid=0;tid<omp_p;tid++){
  4071. std::vector<size_t>& in_node =in_node_[tid] ;
  4072. std::vector<size_t>& scal_idx =scal_idx_[tid] ;
  4073. std::vector<Real_t>& coord_shift=coord_shift_[tid];
  4074. std::vector<size_t>& interac_cnt=interac_cnt_[tid] ;
  4075. size_t a=(nodes_out.size()*(tid+0))/omp_p;
  4076. size_t b=(nodes_out.size()*(tid+1))/omp_p;
  4077. for(size_t i=a;i<b;i++){
  4078. FMMNode_t* tnode=(FMMNode_t*)nodes_out[i];
  4079. Real_t s=std::pow(0.5,tnode->Depth());
  4080. size_t interac_cnt_=0;
  4081. { // W_Type
  4082. Mat_Type type=W_Type;
  4083. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4084. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4085. FMMNode_t* snode=intlst[j];
  4086. size_t snode_id=snode->node_id;
  4087. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4088. if(snode->IsGhost() && snode->src_coord.Dim()+snode->surf_coord.Dim()==0){ // Is non-leaf ghost node
  4089. }else if(snode->IsLeaf() && snode->pt_cnt[0]<=Nsrf) continue; // skip: handled in U-list
  4090. in_node.push_back(snode_id);
  4091. scal_idx.push_back(snode->Depth());
  4092. { // set coord_shift
  4093. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4094. const Real_t* scoord=snode->Coord();
  4095. const Real_t* tcoord=tnode->Coord();
  4096. Real_t shift[COORD_DIM];
  4097. shift[0]=rel_coord[0]*0.25*s-(0+0.25*s)+(tcoord[0]+0.5*s);
  4098. shift[1]=rel_coord[1]*0.25*s-(0+0.25*s)+(tcoord[1]+0.5*s);
  4099. shift[2]=rel_coord[2]*0.25*s-(0+0.25*s)+(tcoord[2]+0.5*s);
  4100. coord_shift.push_back(shift[0]);
  4101. coord_shift.push_back(shift[1]);
  4102. coord_shift.push_back(shift[2]);
  4103. }
  4104. interac_cnt_++;
  4105. }
  4106. }
  4107. interac_cnt.push_back(interac_cnt_);
  4108. }
  4109. }
  4110. { // Combine interac data
  4111. InteracData& interac_data=data.interac_data;
  4112. { // in_node
  4113. typedef size_t ElemType;
  4114. std::vector<std::vector<ElemType> >& vec_=in_node_;
  4115. pvfmm::Vector<ElemType>& vec=interac_data.in_node;
  4116. std::vector<size_t> vec_dsp(omp_p+1,0);
  4117. for(size_t tid=0;tid<omp_p;tid++){
  4118. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4119. }
  4120. vec.ReInit(vec_dsp[omp_p]);
  4121. #pragma omp parallel for
  4122. for(size_t tid=0;tid<omp_p;tid++){
  4123. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4124. }
  4125. }
  4126. { // scal_idx
  4127. typedef size_t ElemType;
  4128. std::vector<std::vector<ElemType> >& vec_=scal_idx_;
  4129. pvfmm::Vector<ElemType>& vec=interac_data.scal_idx;
  4130. std::vector<size_t> vec_dsp(omp_p+1,0);
  4131. for(size_t tid=0;tid<omp_p;tid++){
  4132. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4133. }
  4134. vec.ReInit(vec_dsp[omp_p]);
  4135. #pragma omp parallel for
  4136. for(size_t tid=0;tid<omp_p;tid++){
  4137. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4138. }
  4139. }
  4140. { // coord_shift
  4141. typedef Real_t ElemType;
  4142. std::vector<std::vector<ElemType> >& vec_=coord_shift_;
  4143. pvfmm::Vector<ElemType>& vec=interac_data.coord_shift;
  4144. std::vector<size_t> vec_dsp(omp_p+1,0);
  4145. for(size_t tid=0;tid<omp_p;tid++){
  4146. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4147. }
  4148. vec.ReInit(vec_dsp[omp_p]);
  4149. #pragma omp parallel for
  4150. for(size_t tid=0;tid<omp_p;tid++){
  4151. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4152. }
  4153. }
  4154. { // interac_cnt
  4155. typedef size_t ElemType;
  4156. std::vector<std::vector<ElemType> >& vec_=interac_cnt_;
  4157. pvfmm::Vector<ElemType>& vec=interac_data.interac_cnt;
  4158. std::vector<size_t> vec_dsp(omp_p+1,0);
  4159. for(size_t tid=0;tid<omp_p;tid++){
  4160. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4161. }
  4162. vec.ReInit(vec_dsp[omp_p]);
  4163. #pragma omp parallel for
  4164. for(size_t tid=0;tid<omp_p;tid++){
  4165. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4166. }
  4167. }
  4168. { // interac_dsp
  4169. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  4170. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  4171. dsp.ReInit(cnt.Dim()); if(dsp.Dim()) dsp[0]=0;
  4172. omp_par::scan(&cnt[0],&dsp[0],dsp.Dim());
  4173. }
  4174. }
  4175. }
  4176. PtSetup(setup_data, &data);
  4177. }
  4178. template <class FMMNode>
  4179. void FMM_Pts<FMMNode>::W_List (SetupData<Real_t>& setup_data, bool device){
  4180. if(!this->MultipoleOrder()) return;
  4181. //Add W_List contribution.
  4182. this->EvalListPts(setup_data, device);
  4183. }
  4184. template <class FMMNode>
  4185. void FMM_Pts<FMMNode>::U_ListSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  4186. { // Set setup_data
  4187. setup_data. level=level;
  4188. setup_data.kernel=kernel->k_s2t;
  4189. setup_data. input_data=&buff[4];
  4190. setup_data.output_data=&buff[5];
  4191. setup_data. coord_data=&buff[6];
  4192. Vector<FMMNode_t*>& nodes_in =n_list[4];
  4193. Vector<FMMNode_t*>& nodes_out=n_list[5];
  4194. setup_data.nodes_in .clear();
  4195. setup_data.nodes_out.clear();
  4196. for(size_t i=0;i<nodes_in .Dim();i++) if((level==0 || level==-1) && (nodes_in [i]->src_coord.Dim() || nodes_in [i]->surf_coord.Dim()) && nodes_in [i]->IsLeaf() ) setup_data.nodes_in .push_back(nodes_in [i]);
  4197. for(size_t i=0;i<nodes_out.Dim();i++) if((level==0 || level==-1) && (nodes_out[i]->trg_coord.Dim() ) && nodes_out[i]->IsLeaf() && !nodes_out[i]->IsGhost()) setup_data.nodes_out.push_back(nodes_out[i]);
  4198. }
  4199. struct PackedData{
  4200. size_t len;
  4201. Matrix<Real_t>* ptr;
  4202. Vector<size_t> cnt;
  4203. Vector<size_t> dsp;
  4204. };
  4205. struct InteracData{
  4206. Vector<size_t> in_node;
  4207. Vector<size_t> scal_idx;
  4208. Vector<Real_t> coord_shift;
  4209. Vector<size_t> interac_cnt;
  4210. Vector<size_t> interac_dsp;
  4211. Vector<size_t> interac_cst;
  4212. Vector<Real_t> scal[4*MAX_DEPTH];
  4213. Matrix<Real_t> M[4];
  4214. };
  4215. struct ptSetupData{
  4216. int level;
  4217. const Kernel<Real_t>* kernel;
  4218. PackedData src_coord; // Src coord
  4219. PackedData src_value; // Src density
  4220. PackedData srf_coord; // Srf coord
  4221. PackedData srf_value; // Srf density
  4222. PackedData trg_coord; // Trg coord
  4223. PackedData trg_value; // Trg potential
  4224. InteracData interac_data;
  4225. };
  4226. ptSetupData data;
  4227. data. level=setup_data. level;
  4228. data.kernel=setup_data.kernel;
  4229. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  4230. std::vector<void*>& nodes_out=setup_data.nodes_out;
  4231. { // Set src data
  4232. std::vector<void*>& nodes=nodes_in;
  4233. PackedData& coord=data.src_coord;
  4234. PackedData& value=data.src_value;
  4235. coord.ptr=setup_data. coord_data;
  4236. value.ptr=setup_data. input_data;
  4237. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4238. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4239. coord.cnt.ReInit(nodes.size());
  4240. coord.dsp.ReInit(nodes.size());
  4241. value.cnt.ReInit(nodes.size());
  4242. value.dsp.ReInit(nodes.size());
  4243. #pragma omp parallel for
  4244. for(size_t i=0;i<nodes.size();i++){
  4245. ((FMMNode_t*)nodes[i])->node_id=i;
  4246. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->src_coord;
  4247. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->src_value;
  4248. if(coord_vec.Dim()){
  4249. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  4250. assert(coord.dsp[i]<coord.len);
  4251. coord.cnt[i]=coord_vec.Dim();
  4252. }else{
  4253. coord.dsp[i]=0;
  4254. coord.cnt[i]=0;
  4255. }
  4256. if(value_vec.Dim()){
  4257. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  4258. assert(value.dsp[i]<value.len);
  4259. value.cnt[i]=value_vec.Dim();
  4260. }else{
  4261. value.dsp[i]=0;
  4262. value.cnt[i]=0;
  4263. }
  4264. }
  4265. }
  4266. { // Set srf data
  4267. std::vector<void*>& nodes=nodes_in;
  4268. PackedData& coord=data.srf_coord;
  4269. PackedData& value=data.srf_value;
  4270. coord.ptr=setup_data. coord_data;
  4271. value.ptr=setup_data. input_data;
  4272. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4273. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4274. coord.cnt.ReInit(nodes.size());
  4275. coord.dsp.ReInit(nodes.size());
  4276. value.cnt.ReInit(nodes.size());
  4277. value.dsp.ReInit(nodes.size());
  4278. #pragma omp parallel for
  4279. for(size_t i=0;i<nodes.size();i++){
  4280. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->surf_coord;
  4281. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->surf_value;
  4282. if(coord_vec.Dim()){
  4283. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  4284. assert(coord.dsp[i]<coord.len);
  4285. coord.cnt[i]=coord_vec.Dim();
  4286. }else{
  4287. coord.dsp[i]=0;
  4288. coord.cnt[i]=0;
  4289. }
  4290. if(value_vec.Dim()){
  4291. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  4292. assert(value.dsp[i]<value.len);
  4293. value.cnt[i]=value_vec.Dim();
  4294. }else{
  4295. value.dsp[i]=0;
  4296. value.cnt[i]=0;
  4297. }
  4298. }
  4299. }
  4300. { // Set trg data
  4301. std::vector<void*>& nodes=nodes_out;
  4302. PackedData& coord=data.trg_coord;
  4303. PackedData& value=data.trg_value;
  4304. coord.ptr=setup_data. coord_data;
  4305. value.ptr=setup_data.output_data;
  4306. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4307. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4308. coord.cnt.ReInit(nodes.size());
  4309. coord.dsp.ReInit(nodes.size());
  4310. value.cnt.ReInit(nodes.size());
  4311. value.dsp.ReInit(nodes.size());
  4312. #pragma omp parallel for
  4313. for(size_t i=0;i<nodes.size();i++){
  4314. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->trg_coord;
  4315. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->trg_value;
  4316. if(coord_vec.Dim()){
  4317. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  4318. assert(coord.dsp[i]<coord.len);
  4319. coord.cnt[i]=coord_vec.Dim();
  4320. }else{
  4321. coord.dsp[i]=0;
  4322. coord.cnt[i]=0;
  4323. }
  4324. if(value_vec.Dim()){
  4325. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  4326. assert(value.dsp[i]<value.len);
  4327. value.cnt[i]=value_vec.Dim();
  4328. }else{
  4329. value.dsp[i]=0;
  4330. value.cnt[i]=0;
  4331. }
  4332. }
  4333. }
  4334. { // Set interac_data
  4335. int omp_p=omp_get_max_threads();
  4336. std::vector<std::vector<size_t> > in_node_(omp_p);
  4337. std::vector<std::vector<size_t> > scal_idx_(omp_p);
  4338. std::vector<std::vector<Real_t> > coord_shift_(omp_p);
  4339. std::vector<std::vector<size_t> > interac_cnt_(omp_p);
  4340. size_t m=this->MultipoleOrder();
  4341. size_t Nsrf=(6*(m-1)*(m-1)+2);
  4342. #pragma omp parallel for
  4343. for(size_t tid=0;tid<omp_p;tid++){
  4344. std::vector<size_t>& in_node =in_node_[tid] ;
  4345. std::vector<size_t>& scal_idx =scal_idx_[tid] ;
  4346. std::vector<Real_t>& coord_shift=coord_shift_[tid];
  4347. std::vector<size_t>& interac_cnt=interac_cnt_[tid] ;
  4348. size_t a=(nodes_out.size()*(tid+0))/omp_p;
  4349. size_t b=(nodes_out.size()*(tid+1))/omp_p;
  4350. for(size_t i=a;i<b;i++){
  4351. FMMNode_t* tnode=(FMMNode_t*)nodes_out[i];
  4352. Real_t s=std::pow(0.5,tnode->Depth());
  4353. size_t interac_cnt_=0;
  4354. { // U0_Type
  4355. Mat_Type type=U0_Type;
  4356. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4357. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4358. FMMNode_t* snode=intlst[j];
  4359. size_t snode_id=snode->node_id;
  4360. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4361. in_node.push_back(snode_id);
  4362. scal_idx.push_back(snode->Depth());
  4363. { // set coord_shift
  4364. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4365. const Real_t* scoord=snode->Coord();
  4366. const Real_t* tcoord=tnode->Coord();
  4367. Real_t shift[COORD_DIM];
  4368. shift[0]=rel_coord[0]*0.5*s-(scoord[0]+1.0*s)+(tcoord[0]+0.5*s);
  4369. shift[1]=rel_coord[1]*0.5*s-(scoord[1]+1.0*s)+(tcoord[1]+0.5*s);
  4370. shift[2]=rel_coord[2]*0.5*s-(scoord[2]+1.0*s)+(tcoord[2]+0.5*s);
  4371. coord_shift.push_back(shift[0]);
  4372. coord_shift.push_back(shift[1]);
  4373. coord_shift.push_back(shift[2]);
  4374. }
  4375. interac_cnt_++;
  4376. }
  4377. }
  4378. { // U1_Type
  4379. Mat_Type type=U1_Type;
  4380. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4381. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4382. FMMNode_t* snode=intlst[j];
  4383. size_t snode_id=snode->node_id;
  4384. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4385. in_node.push_back(snode_id);
  4386. scal_idx.push_back(snode->Depth());
  4387. { // set coord_shift
  4388. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4389. const Real_t* scoord=snode->Coord();
  4390. const Real_t* tcoord=tnode->Coord();
  4391. Real_t shift[COORD_DIM];
  4392. shift[0]=rel_coord[0]*1.0*s-(scoord[0]+0.5*s)+(tcoord[0]+0.5*s);
  4393. shift[1]=rel_coord[1]*1.0*s-(scoord[1]+0.5*s)+(tcoord[1]+0.5*s);
  4394. shift[2]=rel_coord[2]*1.0*s-(scoord[2]+0.5*s)+(tcoord[2]+0.5*s);
  4395. coord_shift.push_back(shift[0]);
  4396. coord_shift.push_back(shift[1]);
  4397. coord_shift.push_back(shift[2]);
  4398. }
  4399. interac_cnt_++;
  4400. }
  4401. }
  4402. { // U2_Type
  4403. Mat_Type type=U2_Type;
  4404. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4405. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4406. FMMNode_t* snode=intlst[j];
  4407. size_t snode_id=snode->node_id;
  4408. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4409. in_node.push_back(snode_id);
  4410. scal_idx.push_back(snode->Depth());
  4411. { // set coord_shift
  4412. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4413. const Real_t* scoord=snode->Coord();
  4414. const Real_t* tcoord=tnode->Coord();
  4415. Real_t shift[COORD_DIM];
  4416. shift[0]=rel_coord[0]*0.25*s-(scoord[0]+0.25*s)+(tcoord[0]+0.5*s);
  4417. shift[1]=rel_coord[1]*0.25*s-(scoord[1]+0.25*s)+(tcoord[1]+0.5*s);
  4418. shift[2]=rel_coord[2]*0.25*s-(scoord[2]+0.25*s)+(tcoord[2]+0.5*s);
  4419. coord_shift.push_back(shift[0]);
  4420. coord_shift.push_back(shift[1]);
  4421. coord_shift.push_back(shift[2]);
  4422. }
  4423. interac_cnt_++;
  4424. }
  4425. }
  4426. { // X_Type
  4427. Mat_Type type=X_Type;
  4428. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4429. if(tnode->pt_cnt[1]<=Nsrf)
  4430. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4431. FMMNode_t* snode=intlst[j];
  4432. size_t snode_id=snode->node_id;
  4433. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4434. in_node.push_back(snode_id);
  4435. scal_idx.push_back(snode->Depth());
  4436. { // set coord_shift
  4437. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4438. const Real_t* scoord=snode->Coord();
  4439. const Real_t* tcoord=tnode->Coord();
  4440. Real_t shift[COORD_DIM];
  4441. shift[0]=rel_coord[0]*0.5*s-(scoord[0]+1.0*s)+(tcoord[0]+0.5*s);
  4442. shift[1]=rel_coord[1]*0.5*s-(scoord[1]+1.0*s)+(tcoord[1]+0.5*s);
  4443. shift[2]=rel_coord[2]*0.5*s-(scoord[2]+1.0*s)+(tcoord[2]+0.5*s);
  4444. coord_shift.push_back(shift[0]);
  4445. coord_shift.push_back(shift[1]);
  4446. coord_shift.push_back(shift[2]);
  4447. }
  4448. interac_cnt_++;
  4449. }
  4450. }
  4451. { // W_Type
  4452. Mat_Type type=W_Type;
  4453. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4454. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4455. FMMNode_t* snode=intlst[j];
  4456. size_t snode_id=snode->node_id;
  4457. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4458. if(snode->IsGhost() && snode->src_coord.Dim()+snode->surf_coord.Dim()==0) continue; // Is non-leaf ghost node
  4459. if(snode->pt_cnt[0]> Nsrf) continue;
  4460. in_node.push_back(snode_id);
  4461. scal_idx.push_back(snode->Depth());
  4462. { // set coord_shift
  4463. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4464. const Real_t* scoord=snode->Coord();
  4465. const Real_t* tcoord=tnode->Coord();
  4466. Real_t shift[COORD_DIM];
  4467. shift[0]=rel_coord[0]*0.25*s-(scoord[0]+0.25*s)+(tcoord[0]+0.5*s);
  4468. shift[1]=rel_coord[1]*0.25*s-(scoord[1]+0.25*s)+(tcoord[1]+0.5*s);
  4469. shift[2]=rel_coord[2]*0.25*s-(scoord[2]+0.25*s)+(tcoord[2]+0.5*s);
  4470. coord_shift.push_back(shift[0]);
  4471. coord_shift.push_back(shift[1]);
  4472. coord_shift.push_back(shift[2]);
  4473. }
  4474. interac_cnt_++;
  4475. }
  4476. }
  4477. interac_cnt.push_back(interac_cnt_);
  4478. }
  4479. }
  4480. { // Combine interac data
  4481. InteracData& interac_data=data.interac_data;
  4482. { // in_node
  4483. typedef size_t ElemType;
  4484. std::vector<std::vector<ElemType> >& vec_=in_node_;
  4485. pvfmm::Vector<ElemType>& vec=interac_data.in_node;
  4486. std::vector<size_t> vec_dsp(omp_p+1,0);
  4487. for(size_t tid=0;tid<omp_p;tid++){
  4488. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4489. }
  4490. vec.ReInit(vec_dsp[omp_p]);
  4491. #pragma omp parallel for
  4492. for(size_t tid=0;tid<omp_p;tid++){
  4493. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4494. }
  4495. }
  4496. { // scal_idx
  4497. typedef size_t ElemType;
  4498. std::vector<std::vector<ElemType> >& vec_=scal_idx_;
  4499. pvfmm::Vector<ElemType>& vec=interac_data.scal_idx;
  4500. std::vector<size_t> vec_dsp(omp_p+1,0);
  4501. for(size_t tid=0;tid<omp_p;tid++){
  4502. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4503. }
  4504. vec.ReInit(vec_dsp[omp_p]);
  4505. #pragma omp parallel for
  4506. for(size_t tid=0;tid<omp_p;tid++){
  4507. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4508. }
  4509. }
  4510. { // coord_shift
  4511. typedef Real_t ElemType;
  4512. std::vector<std::vector<ElemType> >& vec_=coord_shift_;
  4513. pvfmm::Vector<ElemType>& vec=interac_data.coord_shift;
  4514. std::vector<size_t> vec_dsp(omp_p+1,0);
  4515. for(size_t tid=0;tid<omp_p;tid++){
  4516. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4517. }
  4518. vec.ReInit(vec_dsp[omp_p]);
  4519. #pragma omp parallel for
  4520. for(size_t tid=0;tid<omp_p;tid++){
  4521. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4522. }
  4523. }
  4524. { // interac_cnt
  4525. typedef size_t ElemType;
  4526. std::vector<std::vector<ElemType> >& vec_=interac_cnt_;
  4527. pvfmm::Vector<ElemType>& vec=interac_data.interac_cnt;
  4528. std::vector<size_t> vec_dsp(omp_p+1,0);
  4529. for(size_t tid=0;tid<omp_p;tid++){
  4530. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4531. }
  4532. vec.ReInit(vec_dsp[omp_p]);
  4533. #pragma omp parallel for
  4534. for(size_t tid=0;tid<omp_p;tid++){
  4535. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4536. }
  4537. }
  4538. { // interac_dsp
  4539. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  4540. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  4541. dsp.ReInit(cnt.Dim()); if(dsp.Dim()) dsp[0]=0;
  4542. omp_par::scan(&cnt[0],&dsp[0],dsp.Dim());
  4543. }
  4544. }
  4545. }
  4546. PtSetup(setup_data, &data);
  4547. }
  4548. template <class FMMNode>
  4549. void FMM_Pts<FMMNode>::U_List (SetupData<Real_t>& setup_data, bool device){
  4550. //Add U_List contribution.
  4551. this->EvalListPts(setup_data, device);
  4552. }
  4553. template <class FMMNode>
  4554. void FMM_Pts<FMMNode>::Down2TargetSetup(SetupData<Real_t>& setup_data, FMMTree_t* tree, std::vector<Matrix<Real_t> >& buff, std::vector<Vector<FMMNode_t*> >& n_list, int level, bool device){
  4555. if(!this->MultipoleOrder()) return;
  4556. { // Set setup_data
  4557. setup_data. level=level;
  4558. setup_data.kernel=kernel->k_l2t;
  4559. setup_data. input_data=&buff[1];
  4560. setup_data.output_data=&buff[5];
  4561. setup_data. coord_data=&buff[6];
  4562. Vector<FMMNode_t*>& nodes_in =n_list[1];
  4563. Vector<FMMNode_t*>& nodes_out=n_list[5];
  4564. setup_data.nodes_in .clear();
  4565. setup_data.nodes_out.clear();
  4566. for(size_t i=0;i<nodes_in .Dim();i++) if((nodes_in [i]->Depth()==level || level==-1) && nodes_in [i]->trg_coord.Dim() && nodes_in [i]->IsLeaf() && !nodes_in [i]->IsGhost()) setup_data.nodes_in .push_back(nodes_in [i]);
  4567. for(size_t i=0;i<nodes_out.Dim();i++) if((nodes_out[i]->Depth()==level || level==-1) && nodes_out[i]->trg_coord.Dim() && nodes_out[i]->IsLeaf() && !nodes_out[i]->IsGhost()) setup_data.nodes_out.push_back(nodes_out[i]);
  4568. }
  4569. struct PackedData{
  4570. size_t len;
  4571. Matrix<Real_t>* ptr;
  4572. Vector<size_t> cnt;
  4573. Vector<size_t> dsp;
  4574. };
  4575. struct InteracData{
  4576. Vector<size_t> in_node;
  4577. Vector<size_t> scal_idx;
  4578. Vector<Real_t> coord_shift;
  4579. Vector<size_t> interac_cnt;
  4580. Vector<size_t> interac_dsp;
  4581. Vector<size_t> interac_cst;
  4582. Vector<Real_t> scal[4*MAX_DEPTH];
  4583. Matrix<Real_t> M[4];
  4584. };
  4585. struct ptSetupData{
  4586. int level;
  4587. const Kernel<Real_t>* kernel;
  4588. PackedData src_coord; // Src coord
  4589. PackedData src_value; // Src density
  4590. PackedData srf_coord; // Srf coord
  4591. PackedData srf_value; // Srf density
  4592. PackedData trg_coord; // Trg coord
  4593. PackedData trg_value; // Trg potential
  4594. InteracData interac_data;
  4595. };
  4596. ptSetupData data;
  4597. data. level=setup_data. level;
  4598. data.kernel=setup_data.kernel;
  4599. std::vector<void*>& nodes_in =setup_data.nodes_in ;
  4600. std::vector<void*>& nodes_out=setup_data.nodes_out;
  4601. { // Set src data
  4602. std::vector<void*>& nodes=nodes_in;
  4603. PackedData& coord=data.src_coord;
  4604. PackedData& value=data.src_value;
  4605. coord.ptr=setup_data. coord_data;
  4606. value.ptr=setup_data. input_data;
  4607. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4608. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4609. coord.cnt.ReInit(nodes.size());
  4610. coord.dsp.ReInit(nodes.size());
  4611. value.cnt.ReInit(nodes.size());
  4612. value.dsp.ReInit(nodes.size());
  4613. #pragma omp parallel for
  4614. for(size_t i=0;i<nodes.size();i++){
  4615. ((FMMNode_t*)nodes[i])->node_id=i;
  4616. Vector<Real_t>& coord_vec=tree->dnwd_equiv_surf[((FMMNode*)nodes[i])->Depth()];
  4617. Vector<Real_t>& value_vec=((FMMData*)((FMMNode*)nodes[i])->FMMData())->dnward_equiv;
  4618. if(coord_vec.Dim()){
  4619. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  4620. assert(coord.dsp[i]<coord.len);
  4621. coord.cnt[i]=coord_vec.Dim();
  4622. }else{
  4623. coord.dsp[i]=0;
  4624. coord.cnt[i]=0;
  4625. }
  4626. if(value_vec.Dim()){
  4627. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  4628. assert(value.dsp[i]<value.len);
  4629. value.cnt[i]=value_vec.Dim();
  4630. }else{
  4631. value.dsp[i]=0;
  4632. value.cnt[i]=0;
  4633. }
  4634. }
  4635. }
  4636. { // Set srf data
  4637. std::vector<void*>& nodes=nodes_in;
  4638. PackedData& coord=data.srf_coord;
  4639. PackedData& value=data.srf_value;
  4640. coord.ptr=setup_data. coord_data;
  4641. value.ptr=setup_data. input_data;
  4642. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4643. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4644. coord.cnt.ReInit(nodes.size());
  4645. coord.dsp.ReInit(nodes.size());
  4646. value.cnt.ReInit(nodes.size());
  4647. value.dsp.ReInit(nodes.size());
  4648. #pragma omp parallel for
  4649. for(size_t i=0;i<nodes.size();i++){
  4650. coord.dsp[i]=0;
  4651. coord.cnt[i]=0;
  4652. value.dsp[i]=0;
  4653. value.cnt[i]=0;
  4654. }
  4655. }
  4656. { // Set trg data
  4657. std::vector<void*>& nodes=nodes_out;
  4658. PackedData& coord=data.trg_coord;
  4659. PackedData& value=data.trg_value;
  4660. coord.ptr=setup_data. coord_data;
  4661. value.ptr=setup_data.output_data;
  4662. coord.len=coord.ptr->Dim(0)*coord.ptr->Dim(1);
  4663. value.len=value.ptr->Dim(0)*value.ptr->Dim(1);
  4664. coord.cnt.ReInit(nodes.size());
  4665. coord.dsp.ReInit(nodes.size());
  4666. value.cnt.ReInit(nodes.size());
  4667. value.dsp.ReInit(nodes.size());
  4668. #pragma omp parallel for
  4669. for(size_t i=0;i<nodes.size();i++){
  4670. Vector<Real_t>& coord_vec=((FMMNode_t*)nodes[i])->trg_coord;
  4671. Vector<Real_t>& value_vec=((FMMNode_t*)nodes[i])->trg_value;
  4672. if(coord_vec.Dim()){
  4673. coord.dsp[i]=&coord_vec[0]-coord.ptr[0][0];
  4674. assert(coord.dsp[i]<coord.len);
  4675. coord.cnt[i]=coord_vec.Dim();
  4676. }else{
  4677. coord.dsp[i]=0;
  4678. coord.cnt[i]=0;
  4679. }
  4680. if(value_vec.Dim()){
  4681. value.dsp[i]=&value_vec[0]-value.ptr[0][0];
  4682. assert(value.dsp[i]<value.len);
  4683. value.cnt[i]=value_vec.Dim();
  4684. }else{
  4685. value.dsp[i]=0;
  4686. value.cnt[i]=0;
  4687. }
  4688. }
  4689. }
  4690. { // Set interac_data
  4691. int omp_p=omp_get_max_threads();
  4692. std::vector<std::vector<size_t> > in_node_(omp_p);
  4693. std::vector<std::vector<size_t> > scal_idx_(omp_p);
  4694. std::vector<std::vector<Real_t> > coord_shift_(omp_p);
  4695. std::vector<std::vector<size_t> > interac_cnt_(omp_p);
  4696. if(this->ScaleInvar()){ // Set scal
  4697. const Kernel<Real_t>* ker=kernel->k_l2l;
  4698. for(size_t l=0;l<MAX_DEPTH;l++){ // scal[l*4+0]
  4699. Vector<Real_t>& scal=data.interac_data.scal[l*4+0];
  4700. Vector<Real_t>& scal_exp=ker->trg_scal;
  4701. scal.ReInit(scal_exp.Dim());
  4702. for(size_t i=0;i<scal.Dim();i++){
  4703. scal[i]=std::pow(2.0,-scal_exp[i]*l);
  4704. }
  4705. }
  4706. for(size_t l=0;l<MAX_DEPTH;l++){ // scal[l*4+1]
  4707. Vector<Real_t>& scal=data.interac_data.scal[l*4+1];
  4708. Vector<Real_t>& scal_exp=ker->src_scal;
  4709. scal.ReInit(scal_exp.Dim());
  4710. for(size_t i=0;i<scal.Dim();i++){
  4711. scal[i]=std::pow(2.0,-scal_exp[i]*l);
  4712. }
  4713. }
  4714. }
  4715. #pragma omp parallel for
  4716. for(size_t tid=0;tid<omp_p;tid++){
  4717. std::vector<size_t>& in_node =in_node_[tid] ;
  4718. std::vector<size_t>& scal_idx =scal_idx_[tid] ;
  4719. std::vector<Real_t>& coord_shift=coord_shift_[tid];
  4720. std::vector<size_t>& interac_cnt=interac_cnt_[tid];
  4721. size_t a=(nodes_out.size()*(tid+0))/omp_p;
  4722. size_t b=(nodes_out.size()*(tid+1))/omp_p;
  4723. for(size_t i=a;i<b;i++){
  4724. FMMNode_t* tnode=(FMMNode_t*)nodes_out[i];
  4725. Real_t s=std::pow(0.5,tnode->Depth());
  4726. size_t interac_cnt_=0;
  4727. { // D2T_Type
  4728. Mat_Type type=D2T_Type;
  4729. Vector<FMMNode_t*>& intlst=tnode->interac_list[type];
  4730. for(size_t j=0;j<intlst.Dim();j++) if(intlst[j]){
  4731. FMMNode_t* snode=intlst[j];
  4732. size_t snode_id=snode->node_id;
  4733. if(snode_id>=nodes_in.size() || nodes_in[snode_id]!=snode) continue;
  4734. in_node.push_back(snode_id);
  4735. scal_idx.push_back(snode->Depth());
  4736. { // set coord_shift
  4737. const int* rel_coord=interac_list.RelativeCoord(type,j);
  4738. const Real_t* scoord=snode->Coord();
  4739. const Real_t* tcoord=tnode->Coord();
  4740. Real_t shift[COORD_DIM];
  4741. shift[0]=rel_coord[0]*0.5*s-(0+0.5*s)+(tcoord[0]+0.5*s);
  4742. shift[1]=rel_coord[1]*0.5*s-(0+0.5*s)+(tcoord[1]+0.5*s);
  4743. shift[2]=rel_coord[2]*0.5*s-(0+0.5*s)+(tcoord[2]+0.5*s);
  4744. coord_shift.push_back(shift[0]);
  4745. coord_shift.push_back(shift[1]);
  4746. coord_shift.push_back(shift[2]);
  4747. }
  4748. interac_cnt_++;
  4749. }
  4750. }
  4751. interac_cnt.push_back(interac_cnt_);
  4752. }
  4753. }
  4754. { // Combine interac data
  4755. InteracData& interac_data=data.interac_data;
  4756. { // in_node
  4757. typedef size_t ElemType;
  4758. std::vector<std::vector<ElemType> >& vec_=in_node_;
  4759. pvfmm::Vector<ElemType>& vec=interac_data.in_node;
  4760. std::vector<size_t> vec_dsp(omp_p+1,0);
  4761. for(size_t tid=0;tid<omp_p;tid++){
  4762. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4763. }
  4764. vec.ReInit(vec_dsp[omp_p]);
  4765. #pragma omp parallel for
  4766. for(size_t tid=0;tid<omp_p;tid++){
  4767. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4768. }
  4769. }
  4770. { // scal_idx
  4771. typedef size_t ElemType;
  4772. std::vector<std::vector<ElemType> >& vec_=scal_idx_;
  4773. pvfmm::Vector<ElemType>& vec=interac_data.scal_idx;
  4774. std::vector<size_t> vec_dsp(omp_p+1,0);
  4775. for(size_t tid=0;tid<omp_p;tid++){
  4776. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4777. }
  4778. vec.ReInit(vec_dsp[omp_p]);
  4779. #pragma omp parallel for
  4780. for(size_t tid=0;tid<omp_p;tid++){
  4781. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4782. }
  4783. }
  4784. { // coord_shift
  4785. typedef Real_t ElemType;
  4786. std::vector<std::vector<ElemType> >& vec_=coord_shift_;
  4787. pvfmm::Vector<ElemType>& vec=interac_data.coord_shift;
  4788. std::vector<size_t> vec_dsp(omp_p+1,0);
  4789. for(size_t tid=0;tid<omp_p;tid++){
  4790. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4791. }
  4792. vec.ReInit(vec_dsp[omp_p]);
  4793. #pragma omp parallel for
  4794. for(size_t tid=0;tid<omp_p;tid++){
  4795. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4796. }
  4797. }
  4798. { // interac_cnt
  4799. typedef size_t ElemType;
  4800. std::vector<std::vector<ElemType> >& vec_=interac_cnt_;
  4801. pvfmm::Vector<ElemType>& vec=interac_data.interac_cnt;
  4802. std::vector<size_t> vec_dsp(omp_p+1,0);
  4803. for(size_t tid=0;tid<omp_p;tid++){
  4804. vec_dsp[tid+1]=vec_dsp[tid]+vec_[tid].size();
  4805. }
  4806. vec.ReInit(vec_dsp[omp_p]);
  4807. #pragma omp parallel for
  4808. for(size_t tid=0;tid<omp_p;tid++){
  4809. memcpy(&vec[0]+vec_dsp[tid],&vec_[tid][0],vec_[tid].size()*sizeof(ElemType));
  4810. }
  4811. }
  4812. { // interac_dsp
  4813. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  4814. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  4815. dsp.ReInit(cnt.Dim()); if(dsp.Dim()) dsp[0]=0;
  4816. omp_par::scan(&cnt[0],&dsp[0],dsp.Dim());
  4817. }
  4818. }
  4819. { // Set M[0], M[1]
  4820. InteracData& interac_data=data.interac_data;
  4821. pvfmm::Vector<size_t>& cnt=interac_data.interac_cnt;
  4822. pvfmm::Vector<size_t>& dsp=interac_data.interac_dsp;
  4823. if(cnt.Dim() && cnt[cnt.Dim()-1]+dsp[dsp.Dim()-1]){
  4824. data.interac_data.M[0]=this->mat->Mat(level, DC2DE0_Type, 0);
  4825. data.interac_data.M[1]=this->mat->Mat(level, DC2DE1_Type, 0);
  4826. }else{
  4827. data.interac_data.M[0].ReInit(0,0);
  4828. data.interac_data.M[1].ReInit(0,0);
  4829. }
  4830. }
  4831. }
  4832. PtSetup(setup_data, &data);
  4833. }
  4834. template <class FMMNode>
  4835. void FMM_Pts<FMMNode>::Down2Target(SetupData<Real_t>& setup_data, bool device){
  4836. if(!this->MultipoleOrder()) return;
  4837. //Add Down2Target contribution.
  4838. this->EvalListPts(setup_data, device);
  4839. }
  4840. template <class FMMNode>
  4841. void FMM_Pts<FMMNode>::PostProcessing(std::vector<FMMNode_t*>& nodes){
  4842. }
  4843. template <class FMMNode>
  4844. void FMM_Pts<FMMNode>::CopyOutput(FMMNode** nodes, size_t n){
  4845. }
  4846. }//end namespace