pvfmm-static-build/scripts/.job.lonestar

#!/bin/bash
#$ -N fmm
#$ -V
#
# Options for Lonestar
#$ -q normal
# $ -A <project>

eval    $nodes_;
eval    $cores_;
eval $mpi_proc_;
eval  $threads_;
eval $max_time_;
eval    $fname_;
eval     $args_;

WORK_DIR=${SGE_O_WORKDIR}
cd ${WORK_DIR}

#export KMP_AFFINITY=verbose
for (( k=0; k<${#nodes[@]}; k++ )) ; do
  if [ "${nodes[k]}" == "${NODES}" ] &&
     [ "${mpi_proc[k]}" == "${MPI_PROC}" ]; then
    export OMP_NUM_THREADS=${threads[k]};

    # CPU only
    EXEC_=${EXEC};
    FNAME=${RESULT_DIR}/$(basename ${EXEC_})_${fname[k]}.out;
    if [ -f ${EXEC_} ] && [ ! -s ${FNAME} ] ; then
      printf '%*s\n\n' "100" ' ' | tr ' ' "#" | tee -a ${FNAME};
      printf "COMMAND: ${EXEC_} ${args[k]}\n" | tee -a ${FNAME};
      ${TIMEOUT} ${max_time[k]} time ibrun tacc_affinity ${EXEC_} ${args[k]} &> >(tee -a ${FNAME});
      printf '\n%*s\n\n' "100" ' ' | tr ' ' "#" | tee -a ${FNAME};
    fi;

  fi;
done;